Variant report
| Variant | rs9356899 |
|---|---|
| Chromosome Location | chr6:23791211-23791212 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:23784877..23787259-chr6:23789996..23792696,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10456288 | 0.99[EUR][1000 genomes] |
| rs12195684 | 0.86[EUR][1000 genomes] |
| rs12196415 | 0.97[EUR][1000 genomes] |
| rs12200386 | 0.97[EUR][1000 genomes] |
| rs12213970 | 0.84[EUR][1000 genomes] |
| rs12215276 | 0.81[EUR][1000 genomes] |
| rs35231344 | 0.90[EUR][1000 genomes] |
| rs35908293 | 0.88[EUR][1000 genomes] |
| rs41387151 | 0.99[EUR][1000 genomes] |
| rs72837350 | 0.99[EUR][1000 genomes] |
| rs7754258 | 0.98[EUR][1000 genomes] |
| rs9348600 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9348604 | 0.98[EUR][1000 genomes] |
| rs9356901 | 0.99[EUR][1000 genomes] |
| rs9356902 | 0.99[EUR][1000 genomes] |
| rs9366533 | 0.94[EUR][1000 genomes] |
| rs9379577 | 0.93[EUR][1000 genomes] |
| rs9379588 | 0.99[EUR][1000 genomes] |
| rs9379589 | 0.99[EUR][1000 genomes] |
| rs9379590 | 0.91[EUR][1000 genomes] |
| rs9379591 | 0.99[EUR][1000 genomes] |
| rs9393477 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9393479 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9393483 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv981322 | chr6:23781341-23791763 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:23790200-23791800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 2 | chr6:23790800-23791800 | Enhancers | Fetal Brain Male | brain |
