Variant report

Variant	nsv884712
Chromosome Location	chr6:32157364-32164062
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1533)
CpG islands
(count:3909)
Chromatin interactive
region (count:61)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1533 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:32162987-32164358	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:32158030-32158555	HepG2	liver:	n/a	chr6:32158352-32158368
3	ARID3A	chr6:32163268-32163922	K562	blood:	n/a	n/a
4	ARID3A	chr6:32158030-32158451	K562	blood:	n/a	chr6:32158352-32158368
5	ATF1	chr6:32163235-32164788	K562	blood:	n/a	n/a
6	ATF2	chr6:32157932-32158257	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr6:32163452-32164657	H1-hESC	embryonic stem cell:	n/a	chr6:32164364-32164375
8	ATF2	chr6:32163541-32164634	GM12878	blood:	n/a	chr6:32164364-32164375
9	ATF2	chr6:32160396-32161023	GM12878	blood:	n/a	n/a
10	ATF2	chr6:32157937-32158328	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr6:32157840-32158413	GM12878	blood:	n/a	n/a
12	ATF2	chr6:32163092-32164845	GM12878	blood:	n/a	chr6:32164364-32164375
13	ATF2	chr6:32163578-32164794	H1-hESC	embryonic stem cell:	n/a	chr6:32164364-32164375
14	ATF3	chr6:32163436-32163989	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr6:32163358-32164096	K562	blood:	n/a	n/a
16	ATF3	chr6:32163848-32164520	K562	blood:	n/a	chr6:32164366-32164373 chr6:32164366-32164376 chr6:32164362-32164377 chr6:32164362-32164375 chr6:32164365-32164385 chr6:32164364-32164375 chr6:32164366-32164374 chr6:32164365-32164373 chr6:32164362-32164373 chr6:32164364-32164377 chr6:32164364-32164375 chr6:32164363-32164373 chr6:32164366-32164377 chr6:32164354-32164374
17	BACH1	chr6:32163483-32164576	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr6:32158024-32158211	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr6:32162884-32163156	K562	blood:	n/a	n/a
20	BATF	chr6:32164006-32164514	GM12878	blood:	n/a	chr6:32164363-32164376
21	BATF	chr6:32157987-32158211	GM12878	blood:	n/a	n/a
22	BCL11A	chr6:32158009-32158532	GM12878	blood:	n/a	chr6:32158172-32158181
23	BCL11A	chr6:32163915-32164655	GM12878	blood:	n/a	chr6:32164347-32164356 chr6:32164499-32164508
24	BCL11A	chr6:32157924-32158312	GM12878	blood:	n/a	chr6:32158172-32158181
25	BCL3	chr6:32163993-32164478	GM12878	blood:	n/a	chr6:32164347-32164356
26	BCL3	chr6:32164025-32164725	A549	lung:	n/a	chr6:32164347-32164356 chr6:32164499-32164508
27	BCL3	chr6:32157949-32158369	A549	lung:	n/a	chr6:32158172-32158181
28	BCL3	chr6:32157840-32158420	GM12878	blood:	n/a	chr6:32158172-32158181
29	BCLAF1	chr6:32157865-32158460	GM12878	blood:	n/a	chr6:32158172-32158181
30	BCLAF1	chr6:32157858-32158485	GM12878	blood:	n/a	chr6:32158172-32158181
31	BCLAF1	chr6:32163423-32164655	GM12878	blood:	n/a	chr6:32164347-32164356 chr6:32164499-32164508
32	BCLAF1	chr6:32160398-32160973	GM12878	blood:	n/a	chr6:32160706-32160715
33	BCLAF1	chr6:32162867-32164546	GM12878	blood:	n/a	chr6:32164347-32164356 chr6:32164499-32164508
34	BHLHE40	chr6:32162969-32164455	HepG2	liver:	n/a	n/a
35	BHLHE40	chr6:32158923-32159181	K562	blood:	n/a	n/a
36	BHLHE40	chr6:32160501-32160785	K562	blood:	n/a	n/a
37	BHLHE40	chr6:32157942-32158506	GM12878	blood:	n/a	n/a
38	BHLHE40	chr6:32158039-32158315	K562	blood:	n/a	n/a
39	BHLHE40	chr6:32159750-32159880	K562	blood:	n/a	n/a
40	BHLHE40	chr6:32162754-32164778	K562	blood:	n/a	n/a
41	BHLHE40	chr6:32162965-32164663	GM12878	blood:	n/a	n/a
42	BRCA1	chr6:32163036-32164450	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr6:32158048-32158270	GM12878	blood:	n/a	n/a
44	BRCA1	chr6:32163666-32164509	GM12878	blood:	n/a	n/a
45	BRCA1	chr6:32163075-32164555	H1-hESC	embryonic stem cell:	n/a	n/a
46	BRCA1	chr6:32159077-32159121	GM12878	blood:	n/a	n/a
47	BRCA1	chr6:32163232-32164560	HepG2	liver:	n/a	n/a
48	BRCA1	chr6:32159421-32159526	GM12878	blood:	n/a	n/a
49	CBX3	chr6:32162732-32165118	K562	blood:	n/a	n/a
50	CBX3	chr6:32157838-32158426	K562	blood:	n/a	n/a

(count:3909 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32157485-32157535	HCM	heart:	n/a
2	chr6:32163411-32163461	HEEpiC	esophagus:	n/a
3	chr6:32163304-32163354	Caco-2	colon:	n/a
4	chr6:32158409-32158459	PFSK-1	brain:	n/a
5	chr6:32162695-32162745	HEK293	kidney:	embryo
6	chr6:32157485-32157535	HCM	heart:	n/a
7	chr6:32163411-32163461	HEEpiC	esophagus:	n/a
8	chr6:32163304-32163354	Caco-2	colon:	n/a
9	chr6:32158409-32158459	PFSK-1	brain:	n/a
10	chr6:32162695-32162745	HEK293	kidney:	embryo
11	chr6:32160074-32160124	HCPEpiC	choroid plexus:	n/a
12	chr6:32163293-32163343	SK-N-SH	brain:	n/a
13	chr6:32163304-32163354	AG04449	skin:	fetal
14	chr6:32162211-32162261	AG10803	skin:	n/a
15	chr6:32163322-32163372	MCF-7	breast:	n/a
16	chr6:32163848-32163898	HMEC	breast:	n/a
17	chr6:32158513-32158563	PFSK-1	brain:	n/a
18	chr6:32157581-32157631	GM12878	blood:	n/a
19	chr6:32163407-32163457	HNPCEpiC	eye:	n/a
20	chr6:32158284-32158334	SKMC	muscle:	n/a
21	chr6:32163411-32163461	HUVEC	blood vessel:	n/a
22	chr6:32163523-32163573	Jurkat	blood:	n/a
23	chr6:32160074-32160124	CMK	blood:	n/a
24	chr6:32160455-32160505	HEK293	kidney:	embryo
25	chr6:32158223-32158273	AG09319	gingival:	n/a
26	chr6:32160798-32160848	MCF-7	breast:	n/a
27	chr6:32164061-32164111	GM06990	blood:	n/a
28	chr6:32162211-32162261	HL-60	blood:	n/a
29	chr6:32158513-32158563	HRCEpiC	kidney:	n/a
30	chr6:32163820-32163870	NB4	blood:	n/a
31	chr6:32162755-32162805	AG10803	skin:	n/a
32	chr6:32158223-32158273	NHBE	bronchial:	n/a
33	chr6:32164061-32164111	AG04450	lung:	fetal
34	chr6:32160455-32160505	MCF10A-Er-Src	breast:	n/a
35	chr6:32163587-32163637	HPAEpiC	pulmonary alveolar:	n/a
36	chr6:32158223-32158273	HPAEpiC	pulmonary alveolar:	n/a
37	chr6:32157454-32157504	PANC-1	pancreas:	n/a
38	chr6:32160605-32160655	HEK293	kidney:	embryo
39	chr6:32159607-32159657	A549	lung:	n/a
40	chr6:32163533-32163583	HEK293	kidney:	embryo
41	chr6:32160074-32160124	HUVEC	blood vessel:	n/a
42	chr6:32163485-32163535	AG09319	gingival:	n/a
43	chr6:32161004-32161054	IMR90	lung:	fetal
44	chr6:32163848-32163898	Caco-2	colon:	n/a
45	chr6:32158196-32158246	GM19239	blood:	n/a
46	chr6:32163322-32163372	GM12891	blood:	n/a
47	chr6:32163562-32163612	U87	brain:	n/a
48	chr6:32163523-32163573	NB4	blood:	n/a
49	chr6:32158268-32158318	HPAEpiC	pulmonary alveolar:	n/a
50	chr6:32157485-32157535	HIPEpiC	eye:	n/a

(count:61 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr3:142297125..142298039-chr6:32162879..32163754,2	HCT-116	colon:
2	chr6:31782025..31784864-chr6:32163977..32165547,2	K562	blood:
3	chr6:32086948..32090712-chr6:32159204..32162196,3	MCF-7	breast:
4	chr6:31925015..31926680-chr6:32161987..32163956,2	K562	blood:
5	chr6:32095195..32097692-chr6:32157646..32160241,2	MCF-7	breast:
6	chr6:32120728..32121661-chr6:32162944..32163486,2	K562	blood:
7	chr6:26020084..26022289-chr6:32156982..32159978,2	MCF-7	breast:
8	chr6:32156798..32159265-chr6:32938692..32941537,2	K562	blood:
9	chr6:32160694..32163136-chr6:32935096..32936645,2	K562	blood:
10	chr6:32119953..32121978-chr6:32160445..32163462,3	MCF-7	breast:
11	chr6:32160494..32165534-chr6:32936226..32940511,8	MCF-7	breast:
12	chr6:32163493..32164376-chr6:32222591..32223147,2	K562	blood:
13	chr6:32080480..32084394-chr6:32162439..32164624,4	K562	blood:
14	chr6:32120233..32126271-chr6:32158822..32166984,18	K562	blood:
15	chr6:32162500..32165238-chr6:33216220..33218069,2	K562	blood:
16	chr6:32161339..32163258-chr6:33237898..33240619,2	MCF-7	breast:
17	chr6:31508700..31511164-chr6:32162690..32164850,2	K562	blood:
18	chr6:32086838..32087695-chr6:32162611..32163178,2	K562	blood:
19	chr6:32094074..32100900-chr6:32161398..32167888,13	K562	blood:
20	chr6:32142678..32147635-chr6:32160639..32166698,10	MCF-7	breast:
21	chr6:32120281..32121979-chr6:32162603..32165254,2	MCF-7	breast:
22	chr6:31939699..31941257-chr6:32163726..32165365,2	K562	blood:
23	chr12:7052992..7054389-chr6:32162801..32164248,4	Hela-S3	cervix:
24	chr6:32096172..32100215-chr6:32154777..32158553,5	K562	blood:
25	chr6:31780396..31783150-chr6:32157710..32160077,2	K562	blood:
26	chr19:13264396..13266032-chr6:32161633..32164589,2	MCF-7	breast:
27	chr17:41393136..41393717-chr6:32163604..32164522,2	HCT-116	colon:
28	chr6:32163664..32164304-chr7:158621932..158622477,2	Hela-S3	cervix:
29	chr6:31865326..31867816-chr6:32162690..32165281,2	K562	blood:
30	chr22:25348882..25349490-chr6:32163550..32164142,2	Hela-S3	cervix:
31	chr6:32130340..32133008-chr6:32156671..32159025,2	K562	blood:
32	chr6:32163789..32165690-chr6:32935200..32936747,2	K562	blood:
33	chr6:32161088..32165326-chr6:32169271..32173030,5	MCF-7	breast:
34	chr6:32163026..32164860-chr6:32937428..32940148,2	MCF-7	breast:
35	chr6:32126148..32128480-chr6:32158401..32160211,2	MCF-7	breast:
36	chr6:32120850..32123436-chr6:32158287..32160470,4	MCF-7	breast:
37	chr6:32158410..32160311-chr6:32168794..32171639,2	K562	blood:
38	chr6:32092056..32098268-chr6:32161262..32166055,9	MCF-7	breast:
39	chr6:31631384..31635745-chr6:32161942..32163949,3	K562	blood:
40	chr6:32121679..32122522-chr6:32162734..32163545,2	K562	blood:
41	chr6:32156687..32160945-chr6:32937394..32941175,4	MCF-7	breast:
42	chr6:32117416..32119221-chr6:32162487..32164414,2	MCF-7	breast:
43	chr6:31865061..31866816-chr6:32161590..32163245,2	MCF-7	breast:
44	chr6:32084304..32090142-chr6:32159452..32164516,8	MCF-7	breast:
45	chr6:31631384..31634257-chr6:32162297..32163949,2	K562	blood:
46	chr6:32054200..32056084-chr6:32161547..32163057,2	MCF-7	breast:
47	chr6:31795638..31797726-chr6:32161977..32163708,2	K562	blood:
48	chr6:32075563..32078131-chr6:32161467..32163128,2	K562	blood:
49	chr6:32081236..32084313-chr6:32157401..32160068,3	K562	blood:
50	chr6:32094644..32097933-chr6:32160950..32166107,5	MCF-7	breast:

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	NOTCH4	hsa-miR-34c-5p	chr6:32162840-32162862
2	NOTCH4	hsa-miR-181c-5p	chr6:32163081-32163100

Variant related genes	Relation type
GPSM3	TF binding region
PBX2	TF binding region
ENSG00000273333	TF binding region
GPSM3	CpG island
PBX2	CpG island
ENSG00000273333	CpG island
ENSG00000175054	chromatin interactions
ENSG00000263020	chromatin interactions
ENSG00000166278	chromatin interactions
ENSG00000198366	chromatin interactions
ENSG00000234006	chromatin interactions
ENSG00000241404	chromatin interactions
ENSG00000117868	chromatin interactions
ENSG00000204371	chromatin interactions
ENSG00000204257	chromatin interactions
ENSG00000198563	chromatin interactions
ENSG00000201823	chromatin interactions
ENSG00000204344	chromatin interactions
ENSG00000204308	chromatin interactions
ENSG00000265236	chromatin interactions
ENSG00000204435	chromatin interactions
ENSG00000223501	chromatin interactions
ENSG00000267598	chromatin interactions
ENSG00000204315	chromatin interactions
ENSG00000223837	chromatin interactions
ENSG00000204314	chromatin interactions
ENSG00000168477	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000204356	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000204438	chromatin interactions
ENSG00000258388	chromatin interactions
ENSG00000204348	chromatin interactions
ENSG00000204387	chromatin interactions
ENSG00000232940	chromatin interactions
ENSG00000231500	chromatin interactions
ENSG00000204256	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000204301	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000204388	chromatin interactions
ENSG00000204389	chromatin interactions
ENSG00000263756	chromatin interactions
ENSG00000213676	chromatin interactions
ENSG00000196176	chromatin interactions
ENSG00000204310	chromatin interactions
ENSG00000204394	chromatin interactions
ENSG00000204469	chromatin interactions
ENSG00000204390	chromatin interactions
ENSG00000221988	chromatin interactions

Extended variants
information (count: 199 )
Associated
traits (count: 132 )

Variant overlapped rSNPs/rCNVs (count:199 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2856437	chr6:32157364-32157365	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs181877716	chr6:32157385-32157386	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
3	rs372099584	chr6:32157392-32157393	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
4	rs541504419	chr6:32157393-32157394	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
5	rs186524891	chr6:32157398-32157399	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
6	rs202061070	chr6:32157399-32157400	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
7	rs199677673	chr6:32157437-32157438	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
8	rs139352631	chr6:32157516-32157517	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
9	rs144084871	chr6:32157560-32157561	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
10	rs200658771	chr6:32157585-32157586	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
11	rs201834744	chr6:32157597-32157598	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
12	rs528299431	chr6:32157647-32157648	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
13	rs182341812	chr6:32157669-32157670	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
14	rs561847403	chr6:32157674-32157675	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
15	rs576377815	chr6:32157696-32157697	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
16	rs186333644	chr6:32157759-32157760	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
17	rs529433866	chr6:32158128-32158129	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
18	rs551089101	chr6:32158199-32158200	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
19	rs569313321	chr6:32158200-32158201	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
20	rs533317226	chr6:32158201-32158202	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
21	rs191205643	chr6:32158276-32158277	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
22	rs176095	chr6:32158319-32158320	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance disease
23	rs534212003	chr6:32158374-32158375	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
24	rs555569793	chr6:32158456-32158457	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
25	rs567518629	chr6:32158529-32158530	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
26	rs535215532	chr6:32158600-32158601	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
27	rs556599650	chr6:32158781-32158782	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
28	rs553111699	chr6:32158928-32158929	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
29	rs373773951	chr6:32158961-32158962	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	Overlapped CNVs	n/a
30	rs575204181	chr6:32159049-32159050	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
31	rs545759142	chr6:32159067-32159068	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
32	rs370194511	chr6:32159094-32159095	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
33	rs183460121	chr6:32159125-32159126	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
34	rs139749211	chr6:32159157-32159158	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
35	rs149772913	chr6:32159158-32159159	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
36	rs145686781	chr6:32159191-32159192	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
37	rs375658968	chr6:32159196-32159197	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
38	rs377714438	chr6:32159234-32159235	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
39	rs540132973	chr6:32159383-32159384	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
40	rs561910133	chr6:32159388-32159389	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
41	rs529089304	chr6:32159403-32159404	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
42	rs544726553	chr6:32159437-32159438	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
43	rs368676550	chr6:32159525-32159526	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
44	rs550485790	chr6:32159535-32159536	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
45	rs372347840	chr6:32159536-32159537	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
46	rs11555539	chr6:32159551-32159552	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
47	rs372672592	chr6:32159612-32159613	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
48	rs544968716	chr6:32159659-32159660	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
49	rs111323174	chr6:32159663-32159664	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
50	rs141537386	chr6:32159674-32159675	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:132)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ovarian cancer	21781307	CNVD
Ependymoma	19289631	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Melanoma	17363583	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Myelofibrosis	22110671	CNVD
Incontinentia Pigmenti	22033527	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Encephalopathy	20692195	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Immune disease	17576883	CNVD
Multiple myeloma	16616336	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1054 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32152400-32160600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:32155600-32157600	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr6:32155800-32157400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
4	chr6:32155800-32157400	Flanking Active TSS	HUVEC	blood vessel
5	chr6:32155800-32158600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:32155800-32158800	Active TSS	HSMM	muscle
7	chr6:32156000-32157400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:32156000-32157400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr6:32156000-32157400	Flanking Active TSS	Fetal Brain Female	brain
10	chr6:32156000-32157400	Flanking Active TSS	Fetal Muscle Trunk	muscle
11	chr6:32156000-32157600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:32156000-32158600	Active TSS	Colon Smooth Muscle	Colon
13	chr6:32156200-32157400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:32156200-32157400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
15	chr6:32156200-32157400	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr6:32156200-32157400	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr6:32156200-32157400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr6:32156200-32157400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
19	chr6:32156200-32157400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:32156200-32157400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:32156200-32157400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:32156200-32157600	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
23	chr6:32156200-32157600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:32156200-32157600	Flanking Active TSS	Placenta	Placenta
25	chr6:32156200-32157800	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr6:32156200-32158200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:32156200-32158200	Active TSS	Fetal Lung	lung
28	chr6:32156200-32158200	Active TSS	Right Atrium	heart
29	chr6:32156200-32158400	Active TSS	Fetal Kidney	kidney
30	chr6:32156200-32158400	Active TSS	NHDF-Ad	bronchial
31	chr6:32156200-32160800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:32156400-32157400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:32156400-32157400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr6:32156400-32157400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:32156400-32157400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:32156400-32157400	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr6:32156400-32157400	Flanking Active TSS	Colonic Mucosa	Colon
38	chr6:32156400-32157400	Transcr. at gene 5' and 3'	Thymus	Thymus
39	chr6:32156400-32157600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:32156400-32158400	Active TSS	H9 Cell Line	embryonic stem cell
41	chr6:32156400-32158600	Active TSS	Ovary	ovary
42	chr6:32156400-32158600	Active TSS	A549	lung
43	chr6:32156400-32158800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:32156400-32158800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr6:32156600-32157400	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr6:32156600-32157400	Flanking Active TSS	Liver	Liver
47	chr6:32156600-32157400	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr6:32156600-32157600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr6:32156600-32157600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr6:32156600-32157600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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