Variant report

Variant	rs176095
Chromosome Location	chr6:32158319-32158320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:232)
CpG islands
(count:61)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:232 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr6:32158002-32158366	GM12878	blood:	n/a	chr6:32158222-32158234
2	POLR2A	chr6:32157954-32160925	GM12878	blood:	n/a	n/a
3	RELA	chr6:32157972-32158415	GM15510	blood:	n/a	chr6:32158173-32158182 chr6:32158173-32158182
4	POLR2A	chr6:32157784-32158446	K562	blood:	n/a	n/a
5	POLR2A	chr6:32148567-32159227	K562	blood:	n/a	n/a
6	EGR1	chr6:32157469-32158414	K562	blood:	n/a	chr6:32157809-32157819 chr6:32158066-32158080 chr6:32157943-32157952 chr6:32157890-32157900 chr6:32158026-32158040
7	MXI1	chr6:32157870-32158429	HepG2	liver:	n/a	n/a
8	POLR2A	chr6:32157788-32158999	K562	blood:	n/a	n/a
9	POLR2A	chr6:32157875-32158705	GM12878	blood:	n/a	n/a
10	STAT5A	chr6:32157844-32158524	GM12878	blood:	n/a	n/a
11	MAX	chr6:32157945-32158330	GM12878	blood:	n/a	chr6:32158237-32158248
12	YY1	chr6:32157795-32158335	K562	blood:	n/a	chr6:32158222-32158233
13	POLR2A	chr6:32153472-32160911	K562	blood:	n/a	n/a
14	MTA3	chr6:32157928-32158372	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:32157979-32158420	U87	brain:	n/a	n/a
16	EGR1	chr6:32157888-32158366	H1-hESC	embryonic stem cell:	n/a	chr6:32158066-32158080 chr6:32157943-32157952 chr6:32157890-32157900 chr6:32158026-32158040
17	BCL3	chr6:32157949-32158369	A549	lung:	n/a	chr6:32158172-32158181
18	POLR2A	chr6:32157935-32158979	Raji	blood:	n/a	n/a
19	MAZ	chr6:32157154-32158580	GM12878	blood:	n/a	chr6:32157735-32157745 chr6:32158237-32158248
20	POLR2A	chr6:32157326-32158471	HepG2	liver:	n/a	n/a
21	POLR2A	chr6:32157979-32158386	Hela-S3	cervix:	n/a	n/a
22	CTCF	chr6:32158054-32158389	GM12878	blood:	n/a	n/a
23	SP1	chr6:32157822-32158604	HepG2	liver:	n/a	chr6:32158370-32158384 chr6:32158114-32158125 chr6:32158439-32158448 chr6:32158141-32158152
24	HMGN3	chr6:32158050-32158423	K562	blood:	n/a	n/a
25	MAZ	chr6:32156177-32158836	K562	blood:	n/a	chr6:32157735-32157745 chr6:32158237-32158248
26	RELA	chr6:32157990-32158383	GM12892	blood:	n/a	chr6:32158173-32158182 chr6:32158173-32158182
27	ZBTB7A	chr6:32157858-32158456	ECC-1	luminal epithelium:	n/a	n/a
28	IRF1	chr6:32158040-32158409	K562	blood:	n/a	n/a
29	TBP	chr6:32158038-32158339	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:32157934-32158386	Hela-S3	cervix:	n/a	n/a
31	MAZ	chr6:32155927-32158717	IMR90	lung:	n/a	chr6:32157735-32157745 chr6:32158237-32158248
32	STAT5A	chr6:32157868-32158331	K562	blood:	n/a	n/a
33	HCFC1	chr6:32157796-32158518	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:32157766-32158529	Hela-S3	cervix:	n/a	n/a
35	CCNT2	chr6:32158002-32158346	K562	blood:	n/a	n/a
36	POLR2A	chr6:32157986-32158751	GM12891	blood:	n/a	n/a
37	POLR2A	chr6:32157898-32159089	K562	blood:	n/a	n/a
38	EP300	chr6:32157898-32158649	K562	blood:	n/a	chr6:32158434-32158450
39	PML	chr6:32157870-32158357	GM12878	blood:	n/a	n/a
40	SPI1	chr6:32157906-32158399	HL-60	blood:	n/a	n/a
41	POLR2A	chr6:32158028-32158358	ProgFib	skin:	n/a	n/a
42	KAP1	chr6:32158080-32158339	U2OS	brain:	n/a	n/a
43	POLR2A	chr6:32157951-32158330	MCF-7	breast:	n/a	n/a
44	POLR2A	chr6:32158025-32158515	HepG2	liver:	n/a	n/a
45	HEY1	chr6:32157757-32158557	HepG2	liver:	n/a	n/a
46	CEBPD	chr6:32157511-32158496	HepG2	liver:	n/a	n/a
47	TRIM28	chr6:32157848-32158377	K562	blood:	n/a	n/a
48	MYBL2	chr6:32157836-32158478	HepG2	liver:	n/a	n/a
49	ZBTB7A	chr6:32157955-32158498	ECC-1	luminal epithelium:	n/a	n/a
50	POLR2A	chr6:32157942-32158454	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32158284-32158334	GM06990	blood:	n/a
2	chr6:32158284-32158334	HRE	kidney:	n/a
3	chr6:32158284-32158334	SAEC	small airway:	n/a
4	chr6:32158284-32158334	BE2_C	brain:	n/a
5	chr6:32158284-32158334	NHDF-neo	bronchial:	n/a
6	chr6:32158284-32158334	MCF-7	breast:	n/a
7	chr6:32158284-32158334	GM19239	blood:	n/a
8	chr6:32158284-32158334	RPTEC	kidney:	n/a
9	chr6:32158284-32158334	ovcar-3	ovarian:	n/a
10	chr6:32158284-32158334	IMR90	lung:	fetal
11	chr6:32158284-32158334	U87	brain:	n/a
12	chr6:32158284-32158334	AG10803	skin:	n/a
13	chr6:32158284-32158334	MCF10A-Er-Src	breast:	n/a
14	chr6:32158284-32158334	HPAEpiC	pulmonary alveolar:	n/a
15	chr6:32158284-32158334	NT2-D1	testis:	n/a
16	chr6:32158284-32158334	A549	lung:	n/a
17	chr6:32158284-32158334	K562	blood:	n/a
18	chr6:32158284-32158334	ECC-1	luminal epithelium:	n/a
19	chr6:32158284-32158334	Jurkat	blood:	n/a
20	chr6:32158284-32158334	NH-A	brain:	n/a
21	chr6:32158284-32158334	AG04449	skin:	fetal
22	chr6:32158284-32158334	HIPEpiC	eye:	n/a
23	chr6:32158284-32158334	HL-60	blood:	n/a
24	chr6:32158284-32158334	GM12878	blood:	n/a
25	chr6:32158284-32158334	NHBE	bronchial:	n/a
26	chr6:32158284-32158334	HNPCEpiC	eye:	n/a
27	chr6:32158284-32158334	Hela-S3	cervix:	n/a
28	chr6:32158284-32158334	SK-N-SH_RA	brain:	n/a
29	chr6:32158284-32158334	HRCEpiC	kidney:	n/a
30	chr6:32158284-32158334	PrEC	prostate:	n/a
31	chr6:32158284-32158334	T-47D	breast:	n/a
32	chr6:32158284-32158334	HCF	heart:	n/a
33	chr6:32158284-32158334	PANC-1	pancreas:	n/a
34	chr6:32158284-32158334	HMEC	breast:	n/a
35	chr6:32158284-32158334	BJ	skin:	n/a
36	chr6:32158284-32158334	Hepatocyte	liver:	n/a
37	chr6:32158284-32158334	HEK293	kidney:	embryo
38	chr6:32158284-32158334	LNCaP	prostate:	n/a
39	chr6:32158284-32158334	HepG2	liver:	n/a
40	chr6:32158284-32158334	GM12892	blood:	n/a
41	chr6:32158284-32158334	HAEpiC	amniotic membrane:	n/a
42	chr6:32158284-32158334	ProgFib	skin:	n/a
43	chr6:32158284-32158334	SKMC	muscle:	n/a
44	chr6:32158284-32158334	HEEpiC	esophagus:	n/a
45	chr6:32158284-32158334	HCM	heart:	n/a
46	chr6:32158284-32158334	H1-hESC	embryonic stem cell:	embryo
47	chr6:32158284-32158334	AoSMC	blood vessel:	n/a
48	chr6:32158284-32158334	HCT-116	colon:	n/a
49	chr6:32158284-32158334	AG09319	gingival:	n/a
50	chr6:32158284-32158334	NB4	blood:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32095195..32097692-chr6:32157646..32160241,2	MCF-7	breast:
2	chr6:32096172..32100215-chr6:32154777..32158553,5	K562	blood:
3	chr6:32156687..32160945-chr6:32937394..32941175,4	MCF-7	breast:
4	chr6:32095298..32098184-chr6:32156498..32160888,5	K562	blood:
5	chr6:26020084..26022289-chr6:32156982..32159978,2	MCF-7	breast:
6	chr6:31587809..31589938-chr6:32155791..32158478,2	K562	blood:
7	chr6:32120850..32123436-chr6:32158287..32160470,4	MCF-7	breast:
8	chr6:32094643..32097861-chr6:32156762..32160967,6	MCF-7	breast:
9	chr6:32081236..32084313-chr6:32157401..32160068,3	K562	blood:
10	chr6:32130340..32133008-chr6:32156671..32159025,2	K562	blood:
11	chr6:31780396..31783150-chr6:32157710..32160077,2	K562	blood:
12	chr6:32156798..32159265-chr6:32938692..32941537,2	K562	blood:
13	chr6:32134251..32137213-chr6:32156487..32158678,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273333	TF binding region
PBX2	TF binding region
ENSG00000273333	CpG island
PBX2	CpG island
ENSG00000221988	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000168477	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000241404	Chromatin interaction
ENSG00000263756	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs204992	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs204993	0.92[AFR][1000 genomes]
rs204994	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs204995	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv462877	chr6:32151443-32177900	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
37	nsv602105	chr6:32151443-32177900	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
38	nsv884708	chr6:32154998-32172366	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
39	nsv602106	chr6:32155448-32161430	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
40	nsv884709	chr6:32155581-32166380	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
41	nsv884710	chr6:32155581-32168595	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
42	nsv884711	chr6:32155581-32171683	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
43	nsv602107	chr6:32156736-32161430	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
44	nsv602108	chr6:32156963-32161430	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
45	nsv884712	chr6:32157364-32164062	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
46	nsv884713	chr6:32157364-32166380	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
47	nsv884714	chr6:32157364-32168595	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
48	nsv602109	chr6:32158319-32161430	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Atopic dermatitis	23042114	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs176095	HLA-DQB1	Cis_1M	lymphoblastoid	RTeQTL
rs176095	ZNF323	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32152400-32160600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:32155800-32158600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:32155800-32158800	Active TSS	HSMM	muscle
4	chr6:32156000-32158600	Active TSS	Colon Smooth Muscle	Colon
5	chr6:32156200-32158400	Active TSS	Fetal Kidney	kidney
6	chr6:32156200-32158400	Active TSS	NHDF-Ad	bronchial
7	chr6:32156200-32160800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:32156400-32158400	Active TSS	H9 Cell Line	embryonic stem cell
9	chr6:32156400-32158600	Active TSS	Ovary	ovary
10	chr6:32156400-32158600	Active TSS	A549	lung
11	chr6:32156400-32158800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:32156400-32158800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:32156600-32158600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:32156600-32158600	Active TSS	Aorta	Aorta
15	chr6:32156600-32158600	Active TSS	Lung	lung
16	chr6:32156600-32158600	Active TSS	Rectal Smooth Muscle	rectum
17	chr6:32156800-32158400	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr6:32156800-32158600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:32156800-32158600	Active TSS	GM12878-XiMat	blood
20	chr6:32156800-32160000	Active TSS	Esophagus	oesophagus
21	chr6:32156800-32160800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:32157000-32158400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:32157000-32158400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr6:32157000-32158400	Active TSS	Fetal Intestine Large	intestine
25	chr6:32157000-32158600	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr6:32157000-32158600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:32157000-32158600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:32157000-32158600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:32157000-32158600	Active TSS	Placenta Amnion	Placenta Amnion
30	chr6:32157000-32158800	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr6:32157000-32160800	Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr6:32157200-32158400	Active TSS	H1 Cell Line	embryonic stem cell
33	chr6:32157200-32158400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:32157200-32158400	Active TSS	Primary monocytes fromperipheralblood	blood
35	chr6:32157200-32158400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:32157200-32158400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:32157200-32158400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:32157200-32158400	Active TSS	Duodenum Mucosa	Duodenum
39	chr6:32157200-32158400	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr6:32157200-32158400	Active TSS	Gastric	stomach
41	chr6:32157200-32158400	Active TSS	Pancreas	Pancrea
42	chr6:32157200-32158400	Active TSS	Psoas Muscle	Psoas
43	chr6:32157200-32158400	Active TSS	Small Intestine	intestine
44	chr6:32157200-32158600	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:32157200-32158600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:32157200-32158600	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:32157200-32158600	Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr6:32157200-32158600	Active TSS	Left Ventricle	heart
49	chr6:32157200-32158600	Active TSS	Right Ventricle	heart
50	chr6:32157200-32158600	Active TSS	Sigmoid Colon	Sigmoid Colon

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