Variant report

Variant nsv885902
Chromosome Location chr6:54588069-54656673
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:54583600-54594200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr6:54587200-54594200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr6:54587400-54594200 Weak transcription NHEK skin
4 chr6:54594200-54594400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr6:54594200-54594800 Enhancers NHEK skin
6 chr6:54594200-54595000 Enhancers HMEC breast
7 chr6:54594200-54595200 Enhancers Breast Myoepithelial Primary Cells Breast
8 chr6:54594200-54595600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr6:54594400-54595000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr6:54594400-54595600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr6:54594600-54595600 Enhancers Fetal Intestine Small intestine
12 chr6:54594800-54595000 Flanking Active TSS NHEK skin
13 chr6:54594800-54595400 Enhancers Rectal Mucosa Donor 31 rectum
14 chr6:54595000-54595200 Flanking Active TSS HMEC breast
15 chr6:54595000-54595200 Enhancers NHEK skin
16 chr6:54595000-54595600 Enhancers Duodenum Mucosa Duodenum
17 chr6:54595000-54595800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr6:54595200-54595400 Flanking Active TSS NHEK skin
19 chr6:54595200-54595600 Enhancers Brain Substantia Nigra brain
20 chr6:54595200-54595600 Enhancers Fetal Intestine Large intestine
21 chr6:54595200-54595600 Enhancers HMEC breast
22 chr6:54595400-54595800 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr6:54595400-54595800 Enhancers NHEK skin
24 chr6:54595600-54599800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr6:54595800-54596200 Enhancers Rectal Mucosa Donor 31 rectum
26 chr6:54599800-54600200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr6:54600200-54612400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr6:54601400-54613800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr6:54612400-54612600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr6:54612600-54613200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr6:54612600-54613400 Enhancers NHEK skin
32 chr6:54613000-54613400 Enhancers HMEC breast
33 chr6:54613200-54613400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr6:54614000-54614200 Enhancers Liver Liver
35 chr6:54622200-54623400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr6:54622800-54623600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr6:54622800-54623600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr6:54622800-54623800 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr6:54623000-54623600 Enhancers iPS-18 Cell Line embryonic stem cell
40 chr6:54623000-54623800 Enhancers HUES6 Cell Line embryonic stem cell
41 chr6:54623000-54624000 Enhancers iPS-15b Cell Line embryonic stem cell
42 chr6:54623200-54623600 Enhancers iPS-20b Cell Line embryonic stem cell
43 chr6:54623200-54623600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
44 chr6:54623400-54624000 Enhancers HUES64 Cell Line embryonic stem cell
45 chr6:54628200-54628800 Enhancers Brain Substantia Nigra brain
46 chr6:54637000-54640400 Weak transcription Fetal Heart heart
47 chr6:54640000-54640800 Enhancers Fetal Lung lung
48 chr6:54640400-54641000 Enhancers Fetal Heart heart
49 chr6:54641200-54641400 Active TSS ES-I3 Cell Line embryonic stem cell
50 chr6:54641400-54642200 Enhancers ES-I3 Cell Line embryonic stem cell

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