Variant report

Variant	nsv885911
Chromosome Location	chr6:55789704-56143231
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2215)
CpG islands
(count:1344)
Chromatin interactive
region (count:49)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

(count:2215 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:55965915-55966165	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:56021431-56021830	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:55955812-55956335	HepG2	liver:	n/a	n/a
4	ATF2	chr6:56108375-56108747	GM12878	blood:	n/a	n/a
5	ATF2	chr6:56111745-56112291	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF3	chr6:56088804-56089169	A549	lung:	n/a	n/a
7	BACH1	chr6:56096065-56096328	H1-hESC	embryonic stem cell:	n/a	chr6:56096166-56096180
8	BACH1	chr6:55940906-55941201	K562	blood:	n/a	chr6:55941022-55941036
9	BACH1	chr6:56093983-56093984	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr6:56112303-56112450	H1-hESC	embryonic stem cell:	n/a	n/a
11	BACH1	chr6:55940817-55941220	H1-hESC	embryonic stem cell:	n/a	chr6:55941022-55941036
12	BCL3	chr6:56088644-56089265	A549	lung:	n/a	n/a
13	BCL3	chr6:56088700-56089182	A549	lung:	n/a	n/a
14	BCL3	chr6:56142843-56143422	A549	lung:	n/a	n/a
15	BCL3	chr6:55965783-55966341	A549	lung:	n/a	chr6:55966245-55966254
16	BHLHE40	chr6:56121557-56121590	GM12878	blood:	n/a	n/a
17	BHLHE40	chr6:55994353-55994624	GM12878	blood:	n/a	n/a
18	BHLHE40	chr6:55888699-55888722	HepG2	liver:	n/a	n/a
19	BHLHE40	chr6:55941016-55941166	K562	blood:	n/a	n/a
20	BRCA1	chr6:55818204-55818625	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr6:56111860-56112384	H1-hESC	embryonic stem cell:	n/a	n/a
22	CBX3	chr6:56018957-56019272	HCT-116	colon:	n/a	n/a
23	CBX3	chr6:55918563-55918866	HCT-116	colon:	n/a	n/a
24	CBX3	chr6:56036994-56037225	K562	blood:	n/a	n/a
25	CBX3	chr6:56036872-56037345	HCT-116	colon:	n/a	n/a
26	CBX3	chr6:56036933-56037432	HCT-116	colon:	n/a	n/a
27	CBX3	chr6:55955872-55956391	HCT-116	colon:	n/a	n/a
28	CBX3	chr6:55965751-55966236	HCT-116	colon:	n/a	n/a
29	CEBPB	chr6:55802020-55802403	HepG2	liver:	n/a	chr6:55802178-55802189
30	CEBPB	chr6:55832757-55833020	IMR90	lung:	n/a	n/a
31	CEBPB	chr6:55790088-55790526	IMR90	lung:	n/a	n/a
32	CEBPB	chr6:56108973-56109257	HepG2	liver:	n/a	chr6:56109112-56109123
33	CEBPB	chr6:55955903-55956318	ECC-1	luminal epithelium:	n/a	n/a
34	CEBPB	chr6:55947672-55947758	HepG2	liver:	n/a	chr6:55947712-55947723 chr6:55947712-55947725
35	CEBPB	chr6:55965906-55966394	MCF-7	breast:	n/a	n/a
36	CEBPB	chr6:55845526-55845787	H1-hESC	embryonic stem cell:	n/a	n/a
37	CEBPB	chr6:56031369-56031555	IMR90	lung:	n/a	n/a
38	CEBPB	chr6:55965901-55966394	A549	lung:	n/a	n/a
39	CEBPB	chr6:56013685-56013951	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr6:56095383-56095644	A549	lung:	n/a	chr6:56095516-56095527 chr6:56095514-56095527 chr6:56095465-56095476 chr6:56095516-56095525 chr6:56095463-56095476 chr6:56095514-56095527 chr6:56095516-56095527 chr6:56095465-56095476 chr6:56095514-56095527 chr6:56095514-56095525 chr6:56095516-56095525 chr6:56095516-56095525 chr6:56095516-56095525 chr6:56095460-56095477
41	CEBPB	chr6:55965805-55966512	A549	lung:	n/a	n/a
42	CEBPB	chr6:55965899-55966311	A549	lung:	n/a	n/a
43	CEBPB	chr6:55955846-55956322	A549	lung:	n/a	n/a
44	CEBPB	chr6:55884861-55885013	H1-hESC	embryonic stem cell:	n/a	chr6:55884963-55884974
45	CEBPB	chr6:55965772-55966529	HCT-116	colon:	n/a	n/a
46	CEBPB	chr6:56095370-56095579	IMR90	lung:	n/a	chr6:56095516-56095527 chr6:56095514-56095527 chr6:56095465-56095476 chr6:56095516-56095525 chr6:56095463-56095476 chr6:56095514-56095527 chr6:56095516-56095527 chr6:56095465-56095476 chr6:56095514-56095527 chr6:56095514-56095525 chr6:56095516-56095525 chr6:56095516-56095525 chr6:56095516-56095525 chr6:56095460-56095477
47	CEBPB	chr6:55965863-55966401	IMR90	lung:	n/a	n/a
48	CEBPB	chr6:56042536-56042820	HepG2	liver:	n/a	chr6:56042678-56042689 chr6:56042749-56042760 chr6:56042679-56042688
49	CEBPB	chr6:55884793-55885108	Hela-S3	cervix:	n/a	chr6:55884963-55884974
50	CEBPB	chr6:55884800-55885126	HepG2	liver:	n/a	chr6:55884963-55884974

(count:1344 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:56112548-56112598	HCF	heart:	n/a
2	chr6:56112590-56112640	IMR90	lung:	fetal
3	chr6:56112548-56112598	HCF	heart:	n/a
4	chr6:56112590-56112640	IMR90	lung:	fetal
5	chr6:56112216-56112266	HCT-116	colon:	n/a
6	chr6:56112216-56112266	AG09319	gingival:	n/a
7	chr6:56112590-56112640	HCPEpiC	choroid plexus:	n/a
8	chr6:56112590-56112640	HPAEpiC	pulmonary alveolar:	n/a
9	chr6:56112392-56112442	HAEpiC	amniotic membrane:	n/a
10	chr6:56112498-56112548	ECC-1	luminal epithelium:	n/a
11	chr6:56112291-56112341	HCPEpiC	choroid plexus:	n/a
12	chr6:56112592-56112642	HRE	kidney:	n/a
13	chr6:56111908-56111958	HEK293	kidney:	embryo
14	chr6:56112216-56112266	HRCEpiC	kidney:	n/a
15	chr6:55887782-55887832	HCT-116	colon:	n/a
16	chr6:56112498-56112548	HAEpiC	amniotic membrane:	n/a
17	chr6:55989097-55989147	K562	blood:	n/a
18	chr6:56114591-56114641	ProgFib	skin:	n/a
19	chr6:56112498-56112548	AG10803	skin:	n/a
20	chr6:56112024-56112074	ovcar-3	ovarian:	n/a
21	chr6:56112696-56112746	HRPEpiC	eye:	n/a
22	chr6:56112548-56112598	U87	brain:	n/a
23	chr6:55965977-55966027	U87	brain:	n/a
24	chr6:56112291-56112341	HEK293	kidney:	embryo
25	chr6:56112392-56112442	AG10803	skin:	n/a
26	chr6:55977770-55977820	HPAEpiC	pulmonary alveolar:	n/a
27	chr6:55887782-55887832	GM12892	blood:	n/a
28	chr6:56112484-56112534	HNPCEpiC	eye:	n/a
29	chr6:55956315-55956365	HRCEpiC	kidney:	n/a
30	chr6:55989734-55989784	AG10803	skin:	n/a
31	chr6:55989097-55989147	HRCEpiC	kidney:	n/a
32	chr6:56112548-56112598	NB4	blood:	n/a
33	chr6:55977770-55977820	HRCEpiC	kidney:	n/a
34	chr6:56112216-56112266	SKMC	muscle:	n/a
35	chr6:56112548-56112598	Caco-2	colon:	n/a
36	chr6:55989097-55989147	U87	brain:	n/a
37	chr6:56112696-56112746	NT2-D1	testis:	n/a
38	chr6:56112498-56112548	SKMC	muscle:	n/a
39	chr6:56112484-56112534	HPAEpiC	pulmonary alveolar:	n/a
40	chr6:55965977-55966027	AG09319	gingival:	n/a
41	chr6:55989734-55989784	HAEpiC	amniotic membrane:	n/a
42	chr6:56112216-56112266	A549	lung:	n/a
43	chr6:55989097-55989147	LNCaP	prostate:	n/a
44	chr6:56112415-56112465	IMR90	lung:	fetal
45	chr6:56112484-56112534	ECC-1	luminal epithelium:	n/a
46	chr6:56112216-56112266	AG09309	skin:	n/a
47	chr6:56112498-56112548	PrEC	prostate:	n/a
48	chr6:56112216-56112266	MCF-7	breast:	n/a
49	chr6:55887782-55887832	RPTEC	kidney:	n/a
50	chr6:56112484-56112534	AG04449	skin:	fetal

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:55824417..55826728-chr6:55848243..55849781,2	K562	blood:
2	chr6:55926997..55929020-chr6:55932279..55934927,2	MCF-7	breast:
3	chr6:55751118..55751828-chr6:55818205..55818779,2	MCF-7	breast:
4	chr6:56081250..56083169-chr6:56099533..56102275,2	MCF-7	breast:
5	chr6:55141267..55142162-chr6:55817824..55818554,3	MCF-7	breast:
6	chr6:55845445..55846395-chr6:55861990..55862829,3	MCF-7	breast:
7	chr6:55824417..55826728-chr6:55848243..55849781,2	K562	blood:
8	chr6:56098481..56101054-chr6:56102369..56105137,2	K562	blood:
9	chr6:55865744..55868626-chr6:55870571..55872911,2	K562	blood:
10	chr6:55886603..55887384-chr6:55918244..55919071,2	MCF-7	breast:
11	chr6:55904181..55905774-chr6:55908809..55911144,2	MCF-7	breast:
12	chr6:56098481..56101054-chr6:56102369..56105137,2	K562	blood:
13	chr6:56105700..56109003-chr6:56111761..56115485,3	MCF-7	breast:
14	chr6:56014723..56016449-chr6:56018115..56020080,2	K562	blood:
15	chr6:55313718..55314729-chr6:55817986..55818869,4	MCF-7	breast:
16	chr6:56120518..56123285-chr6:56126655..56128230,2	MCF-7	breast:
17	chr6:55886603..55887384-chr6:55918244..55919071,2	MCF-7	breast:
18	chr6:55789954..55791634-chr6:55792206..55794273,2	MCF-7	breast:
19	chr6:55313181..55315342-chr6:55800874..55802800,2	MCF-7	breast:
20	chr6:55886589..55887225-chr6:56157105..56157760,2	MCF-7	breast:
21	chr6:55886745..55887604-chr6:56157130..56158002,2	MCF-7	breast:
22	chr6:55377472..55378318-chr6:55806611..55807235,2	MCF-7	breast:
23	chr6:56101839..56104063-chr6:56109870..56113692,3	MCF-7	breast:
24	chr6:56123260..56125074-chr6:56128242..56130559,2	K562	blood:
25	chr6:56123260..56125074-chr6:56128242..56130559,2	K562	blood:
26	chr22:21977904..21980225-chr6:55963610..55966434,2	MCF-7	breast:
27	chr6:55789954..55791634-chr6:55792206..55794273,2	MCF-7	breast:
28	chr6:56081250..56083169-chr6:56099533..56102275,2	MCF-7	breast:
29	chr6:55932576..55934705-chr6:55937943..55940116,3	K562	blood:
30	chr6:55845353..55845898-chr6:56157360..56158001,3	MCF-7	breast:
31	chr6:55310627..55311224-chr6:55806307..55806968,2	MCF-7	breast:
32	chr6:55845445..55846395-chr6:55861990..55862829,3	MCF-7	breast:
33	chr6:55904181..55905774-chr6:55908809..55911144,2	MCF-7	breast:
34	chr6:55310143..55310712-chr6:55818032..55818931,2	MCF-7	breast:
35	chr6:55964932..55967397-chr6:55975389..55977144,2	MCF-7	breast:
36	chr6:55313873..55314721-chr6:55806208..55806737,2	MCF-7	breast:
37	chr6:55964932..55967397-chr6:55975389..55977144,2	MCF-7	breast:
38	chr6:56014723..56016449-chr6:56018115..56020080,2	K562	blood:
39	chr6:56020919..56023138-chr6:56026048..56027819,2	MCF-7	breast:
40	chr6:56020919..56023138-chr6:56026048..56027819,2	MCF-7	breast:
41	chr6:55845084..55846120-chr6:56156878..56158381,9	MCF-7	breast:
42	chr6:55886493..55887163-chr6:56155410..56156320,2	MCF-7	breast:
43	chr6:55926997..55929020-chr6:55932279..55934927,2	MCF-7	breast:
44	chr6:55932576..55934705-chr6:55937943..55940116,3	K562	blood:
45	chr6:56106753..56107362-chr6:56154583..56155363,2	MCF-7	breast:
46	chr6:55865744..55868626-chr6:55870571..55872911,2	K562	blood:
47	chr6:56120518..56123285-chr6:56126655..56128230,2	MCF-7	breast:
48	chr6:56109021..56112703-chr6:56113048..56115800,3	MCF-7	breast:
49	chr6:55309906..55311058-chr6:55817976..55819297,5	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMP5-2	chr6:55956295-55956486	NONHSAT113238
2	lnc-BMP5-3	chr6:55990189-55990418	NONHSAT113239
3	lnc-BMP5-2	chr6:55955608-55955711	NONHSAT113238
4	lnc-DST-3	chr6:56141327-56141594	NONHSAT113241
5	lnc-BMP5-3	chr6:55990894-55991441	NONHSAT113239

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	COL21A1	hsa-miR-29c-3p	chr6:55922423-55922417
2	COL21A1	hsa-miR-29c-3p	chr6:55921829-55921850
3	COL21A1	hsa-miR-29c-3p	chr6:55922417-55922438

Variant related genes	Relation type
ENSG00000219095	TF binding region
COL21A1	TF binding region
NPM1P36	TF binding region
ENSG00000219095	CpG island
COL21A1	CpG island
NPM1P36	CpG island
ENSG00000124749	chromatin interactions

Extended variants
information (count: 11621 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:11621 , 50 per page) page: 1 2 3 4 5 6 7 ... 233

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6906682	chr6:55789704-55789705	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs186727121	chr6:55789730-55789731	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs553432172	chr6:55789737-55789738	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577598628	chr6:55789740-55789741	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546484879	chr6:55789822-55789823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs560111484	chr6:55789823-55789824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573427558	chr6:55789834-55789835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs141324798	chr6:55789959-55789960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370295974	chr6:55790081-55790082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575296039	chr6:55790082-55790083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs542450541	chr6:55790126-55790127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs192345386	chr6:55790133-55790134	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs574224273	chr6:55790146-55790147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs150789255	chr6:55790168-55790169	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559935739	chr6:55790171-55790172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs562348489	chr6:55790339-55790340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs139158886	chr6:55790344-55790345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs115129872	chr6:55790424-55790425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs565581912	chr6:55790431-55790432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs144072605	chr6:55790433-55790434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs183654991	chr6:55790456-55790457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs551218041	chr6:55790467-55790468	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs562979823	chr6:55790550-55790551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs79913195	chr6:55790590-55790591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs551143057	chr6:55793409-55793410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs193255606	chr6:55793414-55793415	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs571373119	chr6:55793420-55793421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs575202687	chr6:55793423-55793424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs377212415	chr6:55793446-55793447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534558208	chr6:55793450-55793451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs1900528	chr6:55793457-55793458	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs1348894	chr6:55793512-55793513	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs1348893	chr6:55793530-55793531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs148471163	chr6:55793557-55793558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs553799525	chr6:55793576-55793577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs72872212	chr6:55793611-55793612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145999988	chr6:55793635-55793636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556042273	chr6:55793664-55793665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs139640960	chr6:55793731-55793732	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs185435363	chr6:55793735-55793736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs62405002	chr6:55793743-55793744	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs564232715	chr6:55793754-55793755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs9475477	chr6:55793766-55793767	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs58044978	chr6:55793783-55793784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs115651494	chr6:55793784-55793785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs569744168	chr6:55793797-55793798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs535587244	chr6:55793855-55793856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs191550268	chr6:55793928-55793929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs571443486	chr6:55793944-55793945	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs565626451	chr6:55793957-55793958	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	21509527	CNVD
lymphocytic leukemia	21291569	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Medulloblastoma	21163964	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:1792 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55783400-55789800	Weak transcription	NHEK	skin
2	chr6:55784600-55789800	Weak transcription	Hela-S3	cervix
3	chr6:55784800-55789800	Weak transcription	HMEC	breast
4	chr6:55789600-55790600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:55789800-55790200	Enhancers	Hela-S3	cervix
6	chr6:55789800-55790200	Enhancers	HMEC	breast
7	chr6:55789800-55790400	Enhancers	Osteobl	bone
8	chr6:55789800-55790600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:55789800-55790600	Enhancers	NHEK	skin
10	chr6:55793400-55794000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:55796000-55796400	Enhancers	Fetal Lung	lung
12	chr6:55801800-55802600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:55801800-55802600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:55802200-55802400	Weak transcription	Fetal Lung	lung
15	chr6:55802400-55803600	Enhancers	Fetal Lung	lung
16	chr6:55802800-55803600	Enhancers	Colon Smooth Muscle	Colon
17	chr6:55807000-55809600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:55807800-55809000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:55807800-55809000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:55807800-55809000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:55808000-55808800	Enhancers	NHLF	lung
22	chr6:55808000-55808800	Enhancers	Osteobl	bone
23	chr6:55813600-55815000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:55814000-55814600	Enhancers	Placenta	Placenta
25	chr6:55814200-55815600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:55814600-55814800	Weak transcription	Placenta	Placenta
27	chr6:55814600-55815600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:55814800-55815600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:55814800-55815600	ZNF genes & repeats	Placenta	Placenta
30	chr6:55815000-55815200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:55815000-55815200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:55815000-55815600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:55815200-55815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:55816600-55820600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:55817800-55818000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:55817800-55818000	Enhancers	Adipose Nuclei	Adipose
37	chr6:55817800-55818000	Enhancers	Colon Smooth Muscle	Colon
38	chr6:55817800-55818000	Enhancers	Fetal Lung	lung
39	chr6:55817800-55818000	Enhancers	Hela-S3	cervix
40	chr6:55817800-55818400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:55817800-55818400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:55817800-55818600	Enhancers	Fetal Heart	heart
43	chr6:55818000-55818200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:55818000-55818200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:55818000-55818200	Flanking Active TSS	Hela-S3	cervix
46	chr6:55818000-55818200	Flanking Active TSS	HSMMtube	muscle
47	chr6:55818000-55818200	Enhancers	Osteobl	bone
48	chr6:55818000-55818400	Active TSS	Muscle Satellite Cultured Cells	--
49	chr6:55818000-55818400	Active TSS	Adipose Nuclei	Adipose
50	chr6:55818000-55818400	Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links