Variant report

Variant	rs1900528
Chromosome Location	chr6:55793457-55793458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55789954..55791634-chr6:55792206..55794273,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1868032	0.89[EUR][1000 genomes]
rs2009726	0.81[ASN][1000 genomes]
rs2022127	0.81[EUR][1000 genomes]
rs2143519	0.83[ASN][1000 genomes]
rs2206682	0.83[ASN][1000 genomes]
rs2223660	0.83[ASN][1000 genomes]
rs2223662	0.83[ASN][1000 genomes]
rs2223663	0.83[ASN][1000 genomes]
rs2745744	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2745745	0.81[ASN][1000 genomes]
rs2745749	0.83[ASN][1000 genomes]
rs2745750	0.81[ASN][1000 genomes]
rs2840991	0.83[ASN][1000 genomes]
rs2841003	0.83[ASN][1000 genomes]
rs2841004	0.83[ASN][1000 genomes]
rs2843539	0.81[ASN][1000 genomes]
rs2843541	0.81[ASN][1000 genomes]
rs4130775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299832	0.81[ASN][1000 genomes]
rs4341007	0.81[ASN][1000 genomes]
rs4342427	0.81[ASN][1000 genomes]
rs4432971	0.85[CEU][hapmap]
rs4552718	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4712110	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4712111	0.83[ASN][1000 genomes]
rs4715569	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56232118	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459119	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459120	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933744	0.83[ASN][1000 genomes]
rs6934604	0.83[ASN][1000 genomes]
rs72870631	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72870667	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72872205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370474	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370476	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382569	0.81[ASN][1000 genomes]
rs9396164	0.81[ASN][1000 genomes]
rs9464306	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464316	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475457	0.91[ASN][1000 genomes]
rs9475458	0.91[ASN][1000 genomes]
rs978644	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55793400-55794000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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