Variant report

Variant	rs72870667
Chromosome Location	chr6:55777110-55777111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1868032	0.89[EUR][1000 genomes]
rs1900528	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2009726	0.81[ASN][1000 genomes]
rs2022127	0.83[EUR][1000 genomes]
rs2143519	0.83[ASN][1000 genomes]
rs2206682	0.83[ASN][1000 genomes]
rs2223660	0.83[ASN][1000 genomes]
rs2223662	0.83[ASN][1000 genomes]
rs2223663	0.83[ASN][1000 genomes]
rs2745744	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2745745	0.81[ASN][1000 genomes]
rs2745749	0.83[ASN][1000 genomes]
rs2745750	0.81[ASN][1000 genomes]
rs2840991	0.83[ASN][1000 genomes]
rs2841003	0.83[ASN][1000 genomes]
rs2841004	0.83[ASN][1000 genomes]
rs2843539	0.81[ASN][1000 genomes]
rs2843541	0.81[ASN][1000 genomes]
rs4130775	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299832	0.81[ASN][1000 genomes]
rs4341007	0.81[ASN][1000 genomes]
rs4342427	0.81[ASN][1000 genomes]
rs4552718	0.83[EUR][1000 genomes]
rs4712110	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4712111	0.83[ASN][1000 genomes]
rs4715569	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56232118	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459119	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459120	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6933744	0.83[ASN][1000 genomes]
rs6934604	0.83[ASN][1000 genomes]
rs72870631	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72872205	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370474	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370476	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382569	0.81[ASN][1000 genomes]
rs9396164	0.81[ASN][1000 genomes]
rs9464306	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464316	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475457	0.91[ASN][1000 genomes]
rs9475458	0.91[ASN][1000 genomes]
rs978644	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2752670	chr6:55614978-55781605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55777000-55778600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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