Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1868032	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1900528	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2009726	0.84[ASN][1000 genomes]
rs2745742	0.83[ASN][1000 genomes]
rs2745744	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2745745	0.84[ASN][1000 genomes]
rs2745746	0.83[ASN][1000 genomes]
rs2843539	0.84[ASN][1000 genomes]
rs2843540	0.81[ASN][1000 genomes]
rs2843541	0.84[ASN][1000 genomes]
rs2843542	0.83[ASN][1000 genomes]
rs2843543	0.83[ASN][1000 genomes]
rs4130775	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4299832	0.84[ASN][1000 genomes]
rs4341007	0.84[ASN][1000 genomes]
rs4342427	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56232118	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6459119	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6459120	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911711	0.81[ASN][1000 genomes]
rs6925035	0.83[ASN][1000 genomes]
rs72870631	0.81[EUR][1000 genomes]
rs72870667	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72872205	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9357881	0.81[ASN][1000 genomes]
rs9370474	0.82[EUR][1000 genomes]
rs9370475	0.81[ASN][1000 genomes]
rs9382569	0.84[ASN][1000 genomes]
rs9396164	0.84[ASN][1000 genomes]
rs9464306	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9464316	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55778400-55782200	Weak transcription	A549	lung
2	chr6:55778400-55782200	Weak transcription	NHDF-Ad	bronchial
3	chr6:55779000-55782000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:55780400-55784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:55780600-55782000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:55780800-55782400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:55780800-55784600	Enhancers	Hela-S3	cervix
8	chr6:55780800-55784600	Enhancers	HSMM	muscle
9	chr6:55780800-55785000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:55781200-55784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:55781400-55782400	Weak transcription	Osteobl	bone
12	chr6:55781400-55782600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:55781600-55782400	Weak transcription	NHEK	skin
14	chr6:55781600-55782400	Weak transcription	NHLF	lung
15	chr6:55781800-55782200	Weak transcription	HMEC	breast
16	chr6:55781800-55782600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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