Variant report

Variant	nsv886040
Chromosome Location	chr6:66577992-66644028
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 581 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:581 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566306589	chr6:66583204-66583205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs71553533	chr6:66583248-66583249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs11751906	chr6:66583266-66583267	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs116145386	chr6:66583274-66583275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs549368051	chr6:66583303-66583304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs143275811	chr6:66583308-66583309	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs1938072	chr6:66583328-66583329	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs373183916	chr6:66583335-66583336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs1938073	chr6:66583387-66583388	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs539121665	chr6:66583393-66583394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs536809134	chr6:66583402-66583403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs139383352	chr6:66583450-66583451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs182088947	chr6:66583479-66583480	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs535421329	chr6:66583486-66583487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs9453462	chr6:66583491-66583492	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs187405017	chr6:66583495-66583496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs537681158	chr6:66583544-66583545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs534071901	chr6:66583569-66583570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs9342507	chr6:66583606-66583607	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs9345703	chr6:66583609-66583610	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs540683841	chr6:66583621-66583622	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs9354319	chr6:66583656-66583657	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs34539284	chr6:66583706-66583707	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs370203435	chr6:66583739-66583740	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs373381367	chr6:66583741-66583742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs62400516	chr6:66583746-66583747	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs189689365	chr6:66583827-66583828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs9342508	chr6:66583869-66583870	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs9354320	chr6:66583901-66583902	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs531999546	chr6:66583911-66583912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs371129985	chr6:66583914-66583915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs546497898	chr6:66583917-66583918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs9354321	chr6:66583996-66583997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs2351708	chr6:66583998-66583999	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs2351709	chr6:66584000-66584001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs2351710	chr6:66584002-66584003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs2351711	chr6:66584004-66584005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs2351712	chr6:66584006-66584007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs2351713	chr6:66584008-66584009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs200638567	chr6:66584020-66584021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs4031878	chr6:66584022-66584023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs9360164	chr6:66584033-66584034	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs565092819	chr6:66584054-66584055	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs532011731	chr6:66584073-66584074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs115424328	chr6:66584126-66584127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs9363472	chr6:66584142-66584143	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs566560340	chr6:66584151-66584152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535133960	chr6:66584154-66584155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs548949032	chr6:66584170-66584171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs569071088	chr6:66584255-66584256	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66583200-66583800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:66583200-66583800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:66583200-66585000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:66583200-66585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:66583400-66584600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:66583400-66584800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:66583600-66584200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:66583600-66585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:66584400-66586800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:66585000-66586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:66586200-66586400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:66602600-66602800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:66602800-66604600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:66609800-66610400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:66622600-66623000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:66633600-66634000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:66633600-66634000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:66634000-66634400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:66634000-66634800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:66634400-66636000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:66634800-66635000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:66635000-66635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:66635400-66635800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:66635600-66636000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:66635600-66636000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:66635600-66636200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:66640000-66640200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:66640200-66641400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:66640200-66641600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:66641600-66641800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:66641800-66645200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links