Variant report

Variant	rs9360164
Chromosome Location	chr6:66584033-66584034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1353872	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1353873	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1353874	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1938072	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1938073	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1938111	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2351714	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2351715	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2351716	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2351717	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2351720	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2351721	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2351722	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2351724	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3960019	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4031876	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4031877	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4529284	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4538687	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4602704	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4710541	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4710542	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4710543	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4710545	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6922612	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9294660	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9342509	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9342517	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9345703	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9345705	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9345715	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9351534	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9354319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9354320	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9354322	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9354323	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9354330	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9363472	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9363483	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9453462	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9453464	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9453474	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9453475	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9453476	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886032	chr6:66278575-66622346	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886034	chr6:66450739-66622346	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886036	chr6:66482647-66598249	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv462990	chr6:66491056-66598938	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv603472	chr6:66491056-66598938	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv886037	chr6:66528177-67026420	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv886038	chr6:66528177-67054961	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886039	chr6:66554082-66644028	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv886040	chr6:66577992-66644028	Active TSS ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv497999	chr6:66583321-67473511	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66583200-66585000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:66583200-66585400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:66583400-66584600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:66583400-66584800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:66583600-66584200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:66583600-66585000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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