Variant report

Variant	nsv886333
Chromosome Location	chr6:86199243-86289415
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:690)
CpG islands
(count:122)
Chromatin interactive
region (count:89)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:690 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:86246818-86247127	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:86225737-86226249	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:86284964-86285407	HepG2	liver:	n/a	n/a
4	BATF	chr6:86205745-86206176	GM12878	blood:	n/a	n/a
5	BATF	chr6:86216073-86216495	GM12878	blood:	n/a	n/a
6	BATF	chr6:86205760-86206009	GM12878	blood:	n/a	n/a
7	BHLHE40	chr6:86223159-86223173	GM12878	blood:	n/a	n/a
8	BRCA1	chr6:86225935-86226188	Hela-S3	cervix:	n/a	n/a
9	BRCA1	chr6:86204289-86205270	Hela-S3	cervix:	n/a	n/a
10	BRCA1	chr6:86208585-86208957	Hela-S3	cervix:	n/a	n/a
11	CCNT2	chr6:86248658-86248776	K562	blood:	n/a	n/a
12	CEBPB	chr6:86278142-86278586	A549	lung:	n/a	n/a
13	CEBPB	chr6:86200024-86200446	MCF-7	breast:	n/a	n/a
14	CEBPB	chr6:86208372-86209019	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr6:86257737-86258093	HepG2	liver:	n/a	chr6:86257898-86257909
16	CEBPB	chr6:86278161-86278480	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr6:86225924-86226285	MCF-7	breast:	n/a	n/a
18	CEBPB	chr6:86225923-86226254	HepG2	liver:	n/a	n/a
19	CEBPB	chr6:86204233-86205071	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chr6:86225952-86226219	A549	lung:	n/a	n/a
21	CEBPB	chr6:86278171-86278479	K562	blood:	n/a	n/a
22	CEBPB	chr6:86204155-86204742	HCT-116	colon:	n/a	n/a
23	CEBPB	chr6:86278204-86278358	H1-hESC	embryonic stem cell:	n/a	n/a
24	CEBPB	chr6:86278177-86278481	HepG2	liver:	n/a	n/a
25	CEBPB	chr6:86271489-86271780	IMR90	lung:	n/a	n/a
26	CEBPB	chr6:86246980-86247026	H1-hESC	embryonic stem cell:	n/a	n/a
27	CEBPB	chr6:86257726-86258057	IMR90	lung:	n/a	chr6:86257898-86257909
28	CEBPB	chr6:86204249-86204633	IMR90	lung:	n/a	n/a
29	CEBPB	chr6:86225826-86226298	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr6:86257775-86257998	A549	lung:	n/a	chr6:86257898-86257909
31	CEBPB	chr6:86204096-86204726	HCT-116	colon:	n/a	n/a
32	CEBPB	chr6:86225898-86226283	ECC-1	luminal epithelium:	n/a	n/a
33	CEBPB	chr6:86278173-86278463	K562	blood:	n/a	n/a
34	CEBPB	chr6:86285014-86285647	A549	lung:	n/a	chr6:86285519-86285530
35	CEBPB	chr6:86225861-86226246	A549	lung:	n/a	n/a
36	CEBPB	chr6:86225819-86226365	HCT-116	colon:	n/a	n/a
37	CEBPB	chr6:86278090-86278502	A549	lung:	n/a	n/a
38	CEBPB	chr6:86285376-86286014	HepG2	liver:	n/a	chr6:86285519-86285530
39	CEBPB	chr6:86203181-86203461	HepG2	liver:	n/a	n/a
40	CEBPB	chr6:86284473-86285906	IMR90	lung:	n/a	chr6:86285519-86285530
41	CHD2	chr6:86261130-86261183	Hela-S3	cervix:	n/a	n/a
42	CHD2	chr6:86208419-86208983	Hela-S3	cervix:	n/a	n/a
43	CTCF	chr6:86247242-86247345	GM10266	blood:	n/a	n/a
44	CTCF	chr6:86246840-86246990	HCM	heart:	n/a	chr6:86246941-86246962 chr6:86246947-86246963 chr6:86246946-86246964 chr6:86246952-86246961 chr6:86246948-86246961
45	CTCF	chr6:86246540-86246690	AG04450	lung:	n/a	n/a
46	CTCF	chr6:86246820-86246970	K562	blood:	n/a	chr6:86246941-86246962 chr6:86246947-86246963 chr6:86246946-86246964 chr6:86246952-86246961 chr6:86246948-86246961
47	CTCF	chr6:86289240-86289390	MCF-7	breast:	n/a	n/a
48	CTCF	chr6:86246860-86247010	HA-sp	spinal cord:	n/a	chr6:86246941-86246962 chr6:86246947-86246963 chr6:86246946-86246964 chr6:86246952-86246961 chr6:86246948-86246961
49	CTCF	chr6:86246857-86247097	HUVEC	blood vessel:	n/a	chr6:86246941-86246962 chr6:86246947-86246963 chr6:86246946-86246964 chr6:86246952-86246961 chr6:86246948-86246961
50	CTCF	chr6:86246440-86246590	RPTEC	kidney:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86215383-86215433	BE2_C	brain:	n/a
2	chr6:86215383-86215433	NB4	blood:	n/a
3	chr6:86215383-86215433	HIPEpiC	eye:	n/a
4	chr6:86215383-86215433	Hela-S3	cervix:	n/a
5	chr6:86205036-86205086	HRPEpiC	eye:	n/a
6	chr6:86215383-86215433	H1-hESC	embryonic stem cell:	embryo
7	chr6:86205036-86205086	H1-hESC	embryonic stem cell:	embryo
8	chr6:86215383-86215433	HepG2	liver:	n/a
9	chr6:86205036-86205086	HL-60	blood:	n/a
10	chr6:86205036-86205086	HEEpiC	esophagus:	n/a
11	chr6:86215383-86215433	GM12892	blood:	n/a
12	chr6:86215383-86215433	Caco-2	colon:	n/a
13	chr6:86215383-86215433	LNCaP	prostate:	n/a
14	chr6:86215383-86215433	HAEpiC	amniotic membrane:	n/a
15	chr6:86215383-86215433	HCF	heart:	n/a
16	chr6:86205036-86205086	HepG2	liver:	n/a
17	chr6:86215383-86215433	NHBE	bronchial:	n/a
18	chr6:86205036-86205086	SK-N-MC	brain:	n/a
19	chr6:86215383-86215433	HRCEpiC	kidney:	n/a
20	chr6:86205036-86205086	AoSMC	blood vessel:	n/a
21	chr6:86215383-86215433	SK-N-SH	brain:	n/a
22	chr6:86215383-86215433	T-47D	breast:	n/a
23	chr6:86205036-86205086	IMR90	lung:	fetal
24	chr6:86215383-86215433	AG10803	skin:	n/a
25	chr6:86215383-86215433	AoSMC	blood vessel:	n/a
26	chr6:86205036-86205086	AG10803	skin:	n/a
27	chr6:86205036-86205086	AG09309	skin:	n/a
28	chr6:86215383-86215433	AG04449	skin:	fetal
29	chr6:86205036-86205086	GM12892	blood:	n/a
30	chr6:86215383-86215433	HRE	kidney:	n/a
31	chr6:86215383-86215433	HCPEpiC	choroid plexus:	n/a
32	chr6:86205036-86205086	Hela-S3	cervix:	n/a
33	chr6:86205036-86205086	BE2_C	brain:	n/a
34	chr6:86215383-86215433	AG09319	gingival:	n/a
35	chr6:86205036-86205086	GM19239	blood:	n/a
36	chr6:86205036-86205086	A549	lung:	n/a
37	chr6:86205036-86205086	AG09319	gingival:	n/a
38	chr6:86205036-86205086	NT2-D1	testis:	n/a
39	chr6:86205036-86205086	GM06990	blood:	n/a
40	chr6:86215383-86215433	GM12891	blood:	n/a
41	chr6:86205036-86205086	SK-N-SH	brain:	n/a
42	chr6:86205036-86205086	Hepatocyte	liver:	n/a
43	chr6:86215383-86215433	HPAEpiC	pulmonary alveolar:	n/a
44	chr6:86215383-86215433	U87	brain:	n/a
45	chr6:86205036-86205086	HCT-116	colon:	n/a
46	chr6:86205036-86205086	Caco-2	colon:	n/a
47	chr6:86205036-86205086	HRE	kidney:	n/a
48	chr6:86215383-86215433	NHDF-neo	bronchial:	n/a
49	chr6:86215383-86215433	CMK	blood:	n/a
50	chr6:86205036-86205086	ProgFib	skin:	n/a

(count:89 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:86279748..86283159-chr6:86286791..86290808,4	K562	blood:
2	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:
3	chr6:86230797..86232766-chr6:86233829..86236046,2	K562	blood:
4	chr6:86284643..86286706-chr6:86299863..86303229,3	K562	blood:
5	chr6:86287653..86290758-chr6:86386971..86389926,3	K562	blood:
6	chr6:86244360..86246151-chr6:86281101..86282612,2	K562	blood:
7	chr6:86207297..86209802-chr6:86213073..86214625,2	K562	blood:
8	chr6:86215713..86217410-chr6:86218817..86221712,2	K562	blood:
9	chr6:86216856..86218839-chr6:86222143..86224772,2	MCF-7	breast:
10	chr6:86288405..86291520-chr6:86301409..86305260,4	K562	blood:
11	chr6:86203775..86205410-chr6:86207113..86209986,2	MCF-7	breast:
12	chr6:86289336..86292710-chr6:86302948..86306481,4	MCF-7	breast:
13	chr6:86285488..86287926-chr6:86288888..86290773,2	MCF-7	breast:
14	chr6:86205630..86207293-chr6:86209333..86212533,3	K562	blood:
15	chr6:86216856..86218839-chr6:86222143..86224772,2	MCF-7	breast:
16	chr6:86272075..86276621-chr6:86278796..86281589,4	K562	blood:
17	chr6:86182269..86185102-chr6:86204566..86206145,2	K562	blood:
18	chr6:86211598..86213102-chr6:86215561..86217190,2	K562	blood:
19	chr6:86258616..86262862-chr6:86386972..86389770,3	K562	blood:
20	chr6:86275566..86278674-chr6:86280666..86283504,3	K562	blood:
21	chr6:86287466..86289317-chr6:86353179..86355732,2	MCF-7	breast:
22	chr6:86198544..86200881-chr6:86202479..86204917,2	MCF-7	breast:
23	chr6:86277174..86279687-chr6:86281414..86283504,2	K562	blood:
24	chr6:86280113..86284148-chr6:86385938..86389543,4	K562	blood:
25	chr6:86252068..86253967-chr6:86254803..86256985,2	MCF-7	breast:
26	chr6:86284276..86286183-chr6:86352139..86353781,2	MCF-7	breast:
27	chr6:86253602..86255869-chr6:86388137..86389916,2	K562	blood:
28	chr6:86227398..86231196-chr6:86231483..86235507,4	K562	blood:
29	chr6:86272075..86276621-chr6:86278796..86281589,4	K562	blood:
30	chr6:86254209..86255785-chr6:86263781..86265838,2	K562	blood:
31	chr6:86264055..86265860-chr6:86266095..86267988,2	MCF-7	breast:
32	chr6:86285488..86287926-chr6:86288888..86290773,2	MCF-7	breast:
33	chr6:86288385..86291520-chr6:86301409..86305260,7	K562	blood:
34	chr6:86279748..86283159-chr6:86286791..86290808,4	K562	blood:
35	chr6:86246106..86247862-chr6:86386298..86390203,3	K562	blood:
36	chr6:86244402..86246705-chr6:86351828..86353927,2	K562	blood:
37	chr6:86213906..86216612-chr6:86245425..86247790,2	K562	blood:
38	chr6:86198544..86200881-chr6:86202479..86204917,2	MCF-7	breast:
39	chr6:86199220..86200919-chr6:86203979..86206335,3	K562	blood:
40	chr1:145096040..145096833-chr6:86203552..86204161,2	Hela-S3	cervix:
41	chr2:86333196..86333767-chr6:86224978..86225478,2	HCT-116	colon:
42	chr6:86246870..86249179-chr6:86250224..86253982,4	K562	blood:
43	chr6:86227398..86231196-chr6:86231483..86235507,4	K562	blood:
44	chr6:86207507..86210473-chr6:86386895..86389586,3	MCF-7	breast:
45	chr6:86281475..86283897-chr6:86288113..86290341,2	K562	blood:
46	chr6:86212509..86214733-chr6:86218733..86220237,2	K562	blood:
47	chr6:86274096..86275733-chr6:86301959..86304370,2	MCF-7	breast:
48	chr6:86207297..86209802-chr6:86213073..86214625,2	K562	blood:
49	chr6:86212509..86214733-chr6:86218733..86220237,2	K562	blood:
50	chr6:86256251..86258999-chr6:86261062..86262660,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYNCRIP-7	chr6:86216951-86217007	NONHSAT113839
2	lnc-FAM165A-1	chr6:86270033-86270491	ENSG00000223998.1
3	lnc-SYNCRIP-7	chr6:86215516-86215723	NONHSAT113839
4	lnc-FAM165A-1	chr6:86270792-86270928	ENSG00000223998.1
5	lnc-SYNCRIP-7	chr6:86217686-86218175	NONHSAT113839
6	lnc-SNX14-2	chr6:86208159-86208764	NONHSAT113838

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	NT5E	hsa-miR-30a-5p	chr6:86204050-86204057
2	NT5E	hsa-miR-30a-5p	chr6:86205150-86205171
3	NT5E	hsa-miR-155-5p	chr6:86203834-86203858
4	NT5E	hsa-miR-30a-5p	chr6:86205164-86205171
5	NT5E	hsa-miR-30a-5p	chr6:86204036-86204057
6	NT5E	hsa-miR-124-3p	chr6:86204436-86204456

Variant related genes	Relation type
SNX14	TF binding region
SNX14	CpG island
ENSG00000223380	chromatin interactions
ENSG00000135316	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000135317	chromatin interactions
ENSG00000068654	chromatin interactions
ENSG00000132300	chromatin interactions

Extended variants
information (count: 3095 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:3095 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2229524	chr6:86199243-86199244	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs370951693	chr6:86199256-86199257	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs375139069	chr6:86199257-86199258	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs551037246	chr6:86199264-86199265	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs560304015	chr6:86199290-86199291	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs566262245	chr6:86199293-86199294	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs144719925	chr6:86199308-86199309	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs139549986	chr6:86199309-86199310	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs138876213	chr6:86199314-86199315	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs368794948	chr6:86199321-86199322	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs200096258	chr6:86199323-86199324	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs9450284	chr6:86199329-86199330	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs149377384	chr6:86199343-86199344	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs374091944	chr6:86199388-86199389	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs538149991	chr6:86199391-86199392	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556946943	chr6:86199399-86199400	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs144709340	chr6:86199555-86199556	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs539070232	chr6:86199560-86199561	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs183099922	chr6:86199623-86199624	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs572471239	chr6:86199636-86199637	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs540375255	chr6:86199649-86199650	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs561742212	chr6:86199760-86199761	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs556825738	chr6:86199763-86199764	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs139608671	chr6:86199779-86199780	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs187282959	chr6:86199795-86199796	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs539264274	chr6:86199840-86199841	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs79114925	chr6:86199855-86199856	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576774471	chr6:86199913-86199914	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559786589	chr6:86199917-86199918	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558987245	chr6:86199965-86199966	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575923887	chr6:86199972-86199973	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs144239693	chr6:86200005-86200006	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs192103224	chr6:86200014-86200015	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536636345	chr6:86200040-86200041	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78431868	chr6:86200147-86200148	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs41271619	chr6:86200149-86200150	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs550480282	chr6:86200151-86200152	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542462690	chr6:86200168-86200169	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs539006977	chr6:86200179-86200180	Enhancers Strong transcription Genic enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372110585	chr6:86200201-86200202	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs376406036	chr6:86200235-86200236	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs146166792	chr6:86200236-86200237	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs146054415	chr6:86200268-86200269	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs370017735	chr6:86200274-86200275	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72905321	chr6:86200277-86200278	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555091279	chr6:86200293-86200294	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527927501	chr6:86200314-86200315	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370536110	chr6:86200323-86200324	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs377417331	chr6:86200337-86200338	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs368679446	chr6:86200341-86200342	Enhancers Genic enhancers Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:2233 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86176800-86242600	Weak transcription	Gastric	stomach
2	chr6:86178800-86206800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:86186800-86206200	Weak transcription	Lung	lung
4	chr6:86186800-86211000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:86191400-86200200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:86192600-86207000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:86192800-86200200	Weak transcription	Psoas Muscle	Psoas
8	chr6:86192800-86205000	Weak transcription	GM12878-XiMat	blood
9	chr6:86192800-86221400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:86193000-86199400	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:86193000-86199800	Strong transcription	NHEK	skin
12	chr6:86193000-86200200	Weak transcription	Hela-S3	cervix
13	chr6:86193000-86203800	Weak transcription	HepG2	liver
14	chr6:86193000-86204400	Weak transcription	Adipose Nuclei	Adipose
15	chr6:86193000-86221200	Weak transcription	A549	lung
16	chr6:86193200-86200200	Strong transcription	Osteobl	bone
17	chr6:86193200-86203400	Strong transcription	NHLF	lung
18	chr6:86193200-86204400	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr6:86193200-86212200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:86193400-86199800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:86193400-86208600	Weak transcription	HUVEC	blood vessel
22	chr6:86193400-86219800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:86193600-86200200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:86193800-86200200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:86194000-86204000	Weak transcription	HSMMtube	muscle
26	chr6:86194800-86200000	Strong transcription	HSMM	muscle
27	chr6:86194800-86206000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:86194800-86206000	Strong transcription	NHDF-Ad	bronchial
29	chr6:86195000-86211800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:86195000-86219800	Weak transcription	Brain Angular Gyrus	brain
31	chr6:86195200-86200200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:86195400-86200200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:86196000-86200600	Strong transcription	Aorta	Aorta
34	chr6:86196200-86202400	Strong transcription	Liver	Liver
35	chr6:86196200-86202800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr6:86196400-86200400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:86196400-86203000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:86196600-86202800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr6:86196800-86206800	Weak transcription	Esophagus	oesophagus
40	chr6:86196800-86221600	Weak transcription	Spleen	Spleen
41	chr6:86197600-86200600	Strong transcription	Rectal Smooth Muscle	rectum
42	chr6:86197800-86200600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:86198000-86199800	Weak transcription	Fetal Stomach	stomach
44	chr6:86198000-86202800	Strong transcription	Ovary	ovary
45	chr6:86198200-86199800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:86198800-86199600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:86198800-86200000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:86198800-86201200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:86199000-86199600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr6:86199000-86200600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links