Variant report

Variant	rs559786589
Chromosome Location	chr6:86199917-86199918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:
2	chr6:86198544..86200881-chr6:86202479..86204917,2	MCF-7	breast:
3	chr6:86199220..86200919-chr6:86203979..86206335,3	K562	blood:
4	chr6:86188777..86190749-chr6:86198754..86200928,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv520112	chr6:86144875-86247759	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv886333	chr6:86199243-86289415	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86176800-86242600	Weak transcription	Gastric	stomach
2	chr6:86178800-86206800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:86186800-86206200	Weak transcription	Lung	lung
4	chr6:86186800-86211000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:86191400-86200200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:86192600-86207000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:86192800-86200200	Weak transcription	Psoas Muscle	Psoas
8	chr6:86192800-86205000	Weak transcription	GM12878-XiMat	blood
9	chr6:86192800-86221400	Weak transcription	Brain Substantia Nigra	brain
10	chr6:86193000-86200200	Weak transcription	Hela-S3	cervix
11	chr6:86193000-86203800	Weak transcription	HepG2	liver
12	chr6:86193000-86204400	Weak transcription	Adipose Nuclei	Adipose
13	chr6:86193000-86221200	Weak transcription	A549	lung
14	chr6:86193200-86200200	Strong transcription	Osteobl	bone
15	chr6:86193200-86203400	Strong transcription	NHLF	lung
16	chr6:86193200-86204400	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr6:86193200-86212200	Weak transcription	Brain Anterior Caudate	brain
18	chr6:86193400-86208600	Weak transcription	HUVEC	blood vessel
19	chr6:86193400-86219800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:86193600-86200200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:86193800-86200200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:86194000-86204000	Weak transcription	HSMMtube	muscle
23	chr6:86194800-86200000	Strong transcription	HSMM	muscle
24	chr6:86194800-86206000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:86194800-86206000	Strong transcription	NHDF-Ad	bronchial
26	chr6:86195000-86211800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:86195000-86219800	Weak transcription	Brain Angular Gyrus	brain
28	chr6:86195200-86200200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:86195400-86200200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:86196000-86200600	Strong transcription	Aorta	Aorta
31	chr6:86196200-86202400	Strong transcription	Liver	Liver
32	chr6:86196200-86202800	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr6:86196400-86200400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:86196400-86203000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:86196600-86202800	Strong transcription	Stomach Smooth Muscle	stomach
36	chr6:86196800-86206800	Weak transcription	Esophagus	oesophagus
37	chr6:86196800-86221600	Weak transcription	Spleen	Spleen
38	chr6:86197600-86200600	Strong transcription	Rectal Smooth Muscle	rectum
39	chr6:86197800-86200600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:86198000-86202800	Strong transcription	Ovary	ovary
41	chr6:86198800-86200000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:86198800-86201200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:86199000-86200600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:86199000-86200800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr6:86199000-86201600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:86199000-86202600	Strong transcription	Primary T cells from cord blood	blood
47	chr6:86199000-86202800	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:86199000-86203000	Enhancers	Placenta	Placenta
49	chr6:86199200-86200800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:86199200-86201400	Genic enhancers	HMEC	breast

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