Variant report

Variant	nsv604092
Chromosome Location	chr6:86114766-86264374
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2548)
CpG islands
(count:1220)
Chromatin interactive
region (count:102)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:2548 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:86246818-86247127	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:86161407-86162208	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:86225737-86226249	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:86114420-86115706	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:86192879-86193076	K562	blood:	n/a	n/a
6	ARID3A	chr6:86161143-86161177	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:86159880-86160249	HepG2	liver:	n/a	n/a
8	ATF2	chr6:86158918-86160044	GM12878	blood:	n/a	chr6:86159672-86159683
9	ATF2	chr6:86128695-86129204	GM12878	blood:	n/a	n/a
10	ATF2	chr6:86159112-86159556	GM12878	blood:	n/a	n/a
11	ATF2	chr6:86170740-86171575	GM12878	blood:	n/a	n/a
12	ATF2	chr6:86170781-86171327	GM12878	blood:	n/a	n/a
13	ATF3	chr6:86173728-86175110	HCT-116	colon:	n/a	n/a
14	ATF3	chr6:86114324-86114947	A549	lung:	n/a	n/a
15	BACH1	chr6:86192838-86193116	K562	blood:	n/a	n/a
16	BATF	chr6:86171016-86171311	GM12878	blood:	n/a	n/a
17	BATF	chr6:86205760-86206009	GM12878	blood:	n/a	n/a
18	BATF	chr6:86216073-86216495	GM12878	blood:	n/a	n/a
19	BATF	chr6:86205745-86206176	GM12878	blood:	n/a	n/a
20	BATF	chr6:86159141-86159373	GM12878	blood:	n/a	n/a
21	BCL11A	chr6:86171061-86171293	GM12878	blood:	n/a	n/a
22	BCL3	chr6:86114423-86115773	A549	lung:	n/a	chr6:86115319-86115328 chr6:86115764-86115773
23	BCL3	chr6:86114295-86115799	A549	lung:	n/a	chr6:86115319-86115328 chr6:86115764-86115773
24	BCL3	chr6:86159030-86159945	GM12878	blood:	n/a	chr6:86159086-86159094
25	BCLAF1	chr6:86170788-86171421	GM12878	blood:	n/a	n/a
26	BCLAF1	chr6:86128592-86129098	GM12878	blood:	n/a	n/a
27	BCLAF1	chr6:86158990-86159383	GM12878	blood:	n/a	chr6:86159086-86159094
28	BCLAF1	chr6:86158958-86160316	GM12878	blood:	n/a	chr6:86159086-86159094
29	BCLAF1	chr6:86192762-86193100	GM12878	blood:	n/a	n/a
30	BHLHE40	chr6:86134768-86135218	GM12878	blood:	n/a	n/a
31	BHLHE40	chr6:86115028-86115689	GM12878	blood:	n/a	n/a
32	BHLHE40	chr6:86170229-86171340	GM12878	blood:	n/a	n/a
33	BHLHE40	chr6:86196372-86196389	K562	blood:	n/a	n/a
34	BHLHE40	chr6:86163482-86163577	GM12878	blood:	n/a	n/a
35	BHLHE40	chr6:86159045-86160284	GM12878	blood:	n/a	chr6:86159085-86159101
36	BHLHE40	chr6:86192884-86193135	K562	blood:	n/a	n/a
37	BHLHE40	chr6:86223159-86223173	GM12878	blood:	n/a	n/a
38	BHLHE40	chr6:86128694-86129098	GM12878	blood:	n/a	n/a
39	BRCA1	chr6:86173886-86174884	Hela-S3	cervix:	n/a	n/a
40	BRCA1	chr6:86204289-86205270	Hela-S3	cervix:	n/a	n/a
41	BRCA1	chr6:86192773-86192973	GM12878	blood:	n/a	n/a
42	BRCA1	chr6:86208585-86208957	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr6:86171707-86171713	GM12878	blood:	n/a	n/a
44	BRCA1	chr6:86159402-86160674	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr6:86225935-86226188	Hela-S3	cervix:	n/a	n/a
46	BRCA1	chr6:86178348-86178376	HepG2	liver:	n/a	n/a
47	BRCA1	chr6:86182246-86182923	Hela-S3	cervix:	n/a	n/a
48	CBX3	chr6:86173583-86175187	HCT-116	colon:	n/a	n/a
49	CBX3	chr6:86135687-86136028	HCT-116	colon:	n/a	n/a
50	CBX3	chr6:86173663-86175172	HCT-116	colon:	n/a	n/a

(count:1220 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86171768-86171818	K562	blood:	n/a
2	chr6:86159251-86159301	K562	blood:	n/a
3	chr6:86159103-86159153	HEK293	kidney:	embryo
4	chr6:86159682-86159732	NHDF-neo	bronchial:	n/a
5	chr6:86159096-86159146	HEK293	kidney:	embryo
6	chr6:86171768-86171818	HIPEpiC	eye:	n/a
7	chr6:86158972-86159022	HCT-116	colon:	n/a
8	chr6:86124742-86124792	HRPEpiC	eye:	n/a
9	chr6:86171768-86171818	ovcar-3	ovarian:	n/a
10	chr6:86179345-86179395	AoSMC	blood vessel:	n/a
11	chr6:86128453-86128503	PANC-1	pancreas:	n/a
12	chr6:86159426-86159476	BJ	skin:	n/a
13	chr6:86159197-86159247	HIPEpiC	eye:	n/a
14	chr6:86174584-86174634	Jurkat	blood:	n/a
15	chr6:86205036-86205086	GM19239	blood:	n/a
16	chr6:86159426-86159476	PFSK-1	brain:	n/a
17	chr6:86160468-86160518	SAEC	small airway:	n/a
18	chr6:86159197-86159247	HRE	kidney:	n/a
19	chr6:86179345-86179395	U87	brain:	n/a
20	chr6:86159103-86159153	HMEC	breast:	n/a
21	chr6:86179345-86179395	IMR90	lung:	fetal
22	chr6:86215383-86215433	T-47D	breast:	n/a
23	chr6:86174584-86174634	AG10803	skin:	n/a
24	chr6:86174584-86174634	AG04449	skin:	fetal
25	chr6:86124742-86124792	HUVEC	blood vessel:	n/a
26	chr6:86159210-86159260	CMK	blood:	n/a
27	chr6:86159682-86159732	HUVEC	blood vessel:	n/a
28	chr6:86128453-86128503	GM12878	blood:	n/a
29	chr6:86159103-86159153	HIPEpiC	eye:	n/a
30	chr6:86159251-86159301	LNCaP	prostate:	n/a
31	chr6:86159682-86159732	AG04449	skin:	fetal
32	chr6:86159426-86159476	GM12891	blood:	n/a
33	chr6:86159251-86159301	HUVEC	blood vessel:	n/a
34	chr6:86128453-86128503	NHDF-neo	bronchial:	n/a
35	chr6:86171768-86171818	HPAEpiC	pulmonary alveolar:	n/a
36	chr6:86205036-86205086	SAEC	small airway:	n/a
37	chr6:86159962-86160012	HPAEpiC	pulmonary alveolar:	n/a
38	chr6:86159962-86160012	SK-N-MC	brain:	n/a
39	chr6:86159103-86159153	U87	brain:	n/a
40	chr6:86169204-86169254	PrEC	prostate:	n/a
41	chr6:86159210-86159260	HMEC	breast:	n/a
42	chr6:86159103-86159153	PrEC	prostate:	n/a
43	chr6:86174584-86174634	SK-N-MC	brain:	n/a
44	chr6:86128453-86128503	A549	lung:	n/a
45	chr6:86160468-86160518	SK-N-SH_RA	brain:	n/a
46	chr6:86128453-86128503	U87	brain:	n/a
47	chr6:86159210-86159260	HRE	kidney:	n/a
48	chr6:86159096-86159146	HepG2	liver:	n/a
49	chr6:86159962-86160012	HUVEC	blood vessel:	n/a
50	chr6:86159962-86160012	HIPEpiC	eye:	n/a

(count:102 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:86230515..86233270-chr6:86240880..86242983,2	MCF-7	breast:
2	chr2:86333196..86333767-chr6:86224978..86225478,2	HCT-116	colon:
3	chr6:86163446..86165204-chr6:86166523..86168514,2	K562	blood:
4	chr6:86199220..86200919-chr6:86203979..86206335,3	K562	blood:
5	chr6:86151157..86153816-chr6:86156988..86158751,2	K562	blood:
6	chr6:86263461..86265279-chr6:86276918..86279076,2	K562	blood:
7	chr6:86198544..86200881-chr6:86202479..86204917,2	MCF-7	breast:
8	chr6:86168492..86171054-chr6:86176309..86178352,2	K562	blood:
9	chr6:86159393..86161618-chr6:86163175..86165214,2	K562	blood:
10	chr6:86131859..86134118-chr6:86142494..86144247,2	MCF-7	breast:
11	chr6:86205630..86207293-chr6:86209333..86212533,3	K562	blood:
12	chr6:86226272..86228604-chr6:86231901..86233578,2	K562	blood:
13	chr6:86230515..86233270-chr6:86240880..86242983,2	MCF-7	breast:
14	chr6:86259058..86261534-chr6:86261647..86264216,2	MCF-7	breast:
15	chr6:86246870..86249179-chr6:86250224..86253982,4	K562	blood:
16	chr6:86160188..86163833-chr6:86163850..86166659,4	MCF-7	breast:
17	chr12:4647633..4648466-chr6:86174133..86174644,2	Hela-S3	cervix:
18	chr6:86163446..86165204-chr6:86166523..86168514,2	K562	blood:
19	chr6:86160188..86163833-chr6:86163850..86166659,4	MCF-7	breast:
20	chr6:86168492..86171054-chr6:86176309..86178352,2	K562	blood:
21	chr6:86203775..86205410-chr6:86207113..86209986,2	MCF-7	breast:
22	chr6:86244402..86246705-chr6:86351828..86353927,2	K562	blood:
23	chr6:86182269..86185102-chr6:86204566..86206145,2	K562	blood:
24	chr6:86156006..86158396-chr6:86159870..86162328,2	K562	blood:
25	chr6:86254209..86255785-chr6:86263781..86265838,2	K562	blood:
26	chr6:86064390..86065396-chr6:86192481..86193521,13	K562	blood:
27	chr6:86253602..86255869-chr6:86388137..86389916,2	K562	blood:
28	chr6:86244360..86246151-chr6:86281101..86282612,2	K562	blood:
29	chr6:86205630..86207293-chr6:86209333..86212533,3	K562	blood:
30	chr6:86151157..86153816-chr6:86156988..86158751,2	K562	blood:
31	chr6:86256251..86258999-chr6:86261062..86262660,2	K562	blood:
32	chr3:72494849..72496352-chr6:86176063..86177563,2	MCF-7	breast:
33	chr1:145096040..145096833-chr6:86203552..86204161,2	Hela-S3	cervix:
34	chr6:86064836..86065431-chr6:86186448..86186988,2	MCF-7	breast:
35	chr6:86254209..86255785-chr6:86263781..86265838,2	K562	blood:
36	chr6:86168171..86170047-chr6:86172335..86175305,2	MCF-7	breast:
37	chr6:86211598..86213102-chr6:86215561..86217190,2	K562	blood:
38	chr6:86166423..86168095-chr6:86199386..86201242,2	MCF-7	breast:
39	chr6:86264055..86265860-chr6:86266095..86267988,2	MCF-7	breast:
40	chr6:86246106..86247862-chr6:86386298..86390203,3	K562	blood:
41	chr20:47894891..47895420-chr6:86159383..86160041,2	Hela-S3	cervix:
42	chr6:86186911..86189535-chr6:86191240..86192894,2	K562	blood:
43	chr6:86182269..86185102-chr6:86204566..86206145,2	K562	blood:
44	chr6:86159096..86161442-chr6:86164229..86167917,3	MCF-7	breast:
45	chr6:86252068..86253967-chr6:86254803..86256985,2	MCF-7	breast:
46	chr6:86207297..86209802-chr6:86213073..86214625,2	K562	blood:
47	chr6:86245425..86248526-chr6:86302419..86304294,3	MCF-7	breast:
48	chr15:57178197..57180890-chr6:86114463..86117112,2	MCF-7	breast:
49	chr6:86131859..86134118-chr6:86142494..86144247,2	MCF-7	breast:
50	chr6:86186911..86189535-chr6:86191240..86192894,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX14-4	chr6:86153656-86155994	NONHSAT113837
2	lnc-SYNCRIP-7	chr6:86217686-86218175	NONHSAT113839
3	lnc-SNX14-2	chr6:86208159-86208764	NONHSAT113838
4	lnc-SNX14-6	chr6:86136375-86136843	NONHSAT113835
5	lnc-SYNCRIP-7	chr6:86215516-86215723	NONHSAT113839
6	lnc-SNX14-4	chr6:86153658-86155994	ucscGeneNc_uc003pkm_2
7	lnc-SNX14-4	chr6:86156450-86156623	ucscGeneNc_uc003pkm_2
8	lnc-SYNCRIP-7	chr6:86216951-86217007	NONHSAT113839
9	lnc-SNX14-4	chr6:86156450-86156623	NONHSAT113837

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	NT5E	hsa-miR-124-3p	chr6:86204436-86204456
2	NT5E	hsa-miR-30a-5p	chr6:86204050-86204057
3	NT5E	hsa-miR-155-5p	chr6:86203834-86203858
4	NT5E	hsa-miR-30a-5p	chr6:86205150-86205171
5	NT5E	hsa-miR-30a-5p	chr6:86205164-86205171
6	NT5E	hsa-miR-30a-5p	chr6:86204036-86204057

Variant related genes	Relation type
DUTP5	TF binding region
TPT1P6	TF binding region
SNX14	TF binding region
NT5E	TF binding region
DUTP5	CpG island
TPT1P6	CpG island
SNX14	CpG island
NT5E	CpG island
ENSG00000223380	chromatin interactions
ENSG00000135316	chromatin interactions
ENSG00000135318	chromatin interactions
ENSG00000124201	chromatin interactions
ENSG00000135317	chromatin interactions
ENSG00000068654	chromatin interactions
ENSG00000177410	chromatin interactions
ENSG00000203875	chromatin interactions
ENSG00000163602	chromatin interactions
ENSG00000132300	chromatin interactions
ENSG00000111247	chromatin interactions
ENSG00000047621	chromatin interactions

Extended variants
information (count: 5274 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:5274 , 50 per page) page: 1 2 3 4 5 6 7 ... 106

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9450270	chr6:86114766-86114767	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs9450271	chr6:86114837-86114838	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs376023587	chr6:86114911-86114912	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs192562097	chr6:86114966-86114967	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs543338216	chr6:86115000-86115001	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs184946991	chr6:86115014-86115015	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs371038659	chr6:86115086-86115087	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs147929977	chr6:86115129-86115130	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs199749322	chr6:86115185-86115186	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs386703416	chr6:86115187-86115188	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs1744121	chr6:86115189-86115190	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs1744122	chr6:86115218-86115219	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs554113	chr6:86115244-86115245	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs189884068	chr6:86115249-86115250	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs567951992	chr6:86115274-86115275	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs637346	chr6:86115282-86115283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs550455064	chr6:86115329-86115330	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs569341380	chr6:86115390-86115391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs539517118	chr6:86115426-86115427	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs140514717	chr6:86115520-86115521	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs573255144	chr6:86115529-86115530	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs534534413	chr6:86115556-86115557	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs565510779	chr6:86115562-86115563	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs150005996	chr6:86115584-86115585	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs638745	chr6:86115587-86115588	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs550499	chr6:86115602-86115603	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs77253893	chr6:86115683-86115684	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs527670	chr6:86115779-86115780	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs545557353	chr6:86115845-86115846	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs640093	chr6:86115866-86115867	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs528066542	chr6:86115869-86115870	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs35165820	chr6:86115960-86115961	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs193068135	chr6:86116001-86116002	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs549010004	chr6:86116043-86116044	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs529132908	chr6:86116096-86116097	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs575667036	chr6:86116125-86116126	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs184687800	chr6:86116151-86116152	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs111440992	chr6:86116185-86116186	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs114447567	chr6:86116299-86116300	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs522915	chr6:86116321-86116322	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs566913906	chr6:86116329-86116330	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs534182307	chr6:86116375-86116376	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs522129	chr6:86116381-86116382	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs145201827	chr6:86116387-86116388	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs538127474	chr6:86116407-86116408	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs556744050	chr6:86116424-86116425	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs557645349	chr6:86116457-86116458	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs577387400	chr6:86116458-86116459	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs578098972	chr6:86116480-86116481	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs370680971	chr6:86116494-86116495	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3486 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86108400-86116600	Enhancers	Fetal Intestine Small	intestine
2	chr6:86110200-86115800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:86110200-86116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:86110800-86116600	Enhancers	Fetal Intestine Large	intestine
5	chr6:86111000-86115800	Enhancers	Primary T cells from cord blood	blood
6	chr6:86111000-86116200	Enhancers	Small Intestine	intestine
7	chr6:86111000-86116600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:86111200-86115200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:86111200-86116200	Enhancers	Stomach Mucosa	stomach
10	chr6:86111200-86116400	Enhancers	Placenta	Placenta
11	chr6:86111400-86115200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:86111400-86115600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:86111600-86115000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:86111800-86115000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:86112000-86114800	Weak transcription	Dnd41	blood
16	chr6:86112600-86115400	Enhancers	Esophagus	oesophagus
17	chr6:86112800-86114800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:86112800-86115000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:86112800-86115600	Flanking Active TSS	NHEK	skin
20	chr6:86112800-86115800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr6:86113000-86115600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:86113000-86115600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:86113400-86115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:86113400-86115400	Weak transcription	Lung	lung
25	chr6:86113400-86115400	Weak transcription	Ovary	ovary
26	chr6:86113400-86131600	Weak transcription	Right Atrium	heart
27	chr6:86113600-86115000	Weak transcription	Adipose Nuclei	Adipose
28	chr6:86113600-86115400	Enhancers	Liver	Liver
29	chr6:86113600-86115400	Flanking Active TSS	HUVEC	blood vessel
30	chr6:86113600-86115600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:86113800-86114800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:86113800-86115000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:86113800-86115600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:86113800-86117800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr6:86113800-86118000	Enhancers	NHLF	lung
36	chr6:86114000-86114800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:86114000-86114800	Weak transcription	Fetal Lung	lung
38	chr6:86114000-86114800	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:86114000-86114800	Enhancers	HSMM	muscle
40	chr6:86114000-86115400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr6:86114000-86115400	Active TSS	A549	lung
42	chr6:86114000-86116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:86114000-86116600	Enhancers	Pancreas	Pancrea
44	chr6:86114200-86114800	Enhancers	Gastric	stomach
45	chr6:86114200-86114800	Active TSS	HMEC	breast
46	chr6:86114200-86115400	Enhancers	Aorta	Aorta
47	chr6:86114400-86114800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:86114400-86115400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:86114400-86115600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr6:86114400-86115600	Flanking Active TSS	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links