Variant report

Variant	rs199749322
Chromosome Location	chr6:86115185-86115186
allele	-/GA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57178197..57180890-chr6:86114463..86117112,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv830721	chr6:85987644-86147414	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1019960	chr6:86023236-86136666	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86108400-86116600	Enhancers	Fetal Intestine Small	intestine
2	chr6:86110200-86115800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:86110200-86116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:86110800-86116600	Enhancers	Fetal Intestine Large	intestine
5	chr6:86111000-86115800	Enhancers	Primary T cells from cord blood	blood
6	chr6:86111000-86116200	Enhancers	Small Intestine	intestine
7	chr6:86111000-86116600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:86111200-86115200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:86111200-86116200	Enhancers	Stomach Mucosa	stomach
10	chr6:86111200-86116400	Enhancers	Placenta	Placenta
11	chr6:86111400-86115200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:86111400-86115600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:86112600-86115400	Enhancers	Esophagus	oesophagus
14	chr6:86112800-86115600	Flanking Active TSS	NHEK	skin
15	chr6:86112800-86115800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:86113000-86115600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:86113000-86115600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:86113400-86115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:86113400-86115400	Weak transcription	Lung	lung
20	chr6:86113400-86115400	Weak transcription	Ovary	ovary
21	chr6:86113400-86131600	Weak transcription	Right Atrium	heart
22	chr6:86113600-86115400	Enhancers	Liver	Liver
23	chr6:86113600-86115400	Flanking Active TSS	HUVEC	blood vessel
24	chr6:86113600-86115600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:86113800-86115600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:86113800-86117800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:86113800-86118000	Enhancers	NHLF	lung
28	chr6:86114000-86115400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:86114000-86115400	Active TSS	A549	lung
30	chr6:86114000-86116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:86114000-86116600	Enhancers	Pancreas	Pancrea
32	chr6:86114200-86115400	Enhancers	Aorta	Aorta
33	chr6:86114400-86115400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:86114400-86115600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:86114400-86115600	Flanking Active TSS	Hela-S3	cervix
36	chr6:86114400-86115800	Enhancers	Fetal Thymus	thymus
37	chr6:86114400-86118200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:86114600-86115400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:86114600-86115400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:86114600-86115400	Enhancers	Colonic Mucosa	Colon
41	chr6:86114600-86115400	Enhancers	GM12878-XiMat	blood
42	chr6:86114600-86116000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:86114600-86117600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:86114600-86118000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:86114600-86118200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:86114800-86115200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:86114800-86115200	Weak transcription	Gastric	stomach
48	chr6:86114800-86115200	Flanking Active TSS	HMEC	breast
49	chr6:86114800-86115200	Flanking Active TSS	HSMMtube	muscle
50	chr6:86114800-86115400	Flanking Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links