Variant report

Variant	rs77253893
Chromosome Location	chr6:86115683-86115684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57178197..57180890-chr6:86114463..86117112,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv830721	chr6:85987644-86147414	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1019960	chr6:86023236-86136666	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86108400-86116600	Enhancers	Fetal Intestine Small	intestine
2	chr6:86110200-86115800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:86110200-86116000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:86110800-86116600	Enhancers	Fetal Intestine Large	intestine
5	chr6:86111000-86115800	Enhancers	Primary T cells from cord blood	blood
6	chr6:86111000-86116200	Enhancers	Small Intestine	intestine
7	chr6:86111000-86116600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:86111200-86116200	Enhancers	Stomach Mucosa	stomach
9	chr6:86111200-86116400	Enhancers	Placenta	Placenta
10	chr6:86112800-86115800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:86113400-86131600	Weak transcription	Right Atrium	heart
12	chr6:86113800-86117800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:86113800-86118000	Enhancers	NHLF	lung
14	chr6:86114000-86116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:86114000-86116600	Enhancers	Pancreas	Pancrea
16	chr6:86114400-86115800	Enhancers	Fetal Thymus	thymus
17	chr6:86114400-86118200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:86114600-86116000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:86114600-86117600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:86114600-86118000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:86114600-86118200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:86114800-86115800	Enhancers	Fetal Lung	lung
23	chr6:86115000-86117200	Enhancers	NHDF-Ad	bronchial
24	chr6:86115200-86116400	Enhancers	Gastric	stomach
25	chr6:86115200-86116400	Enhancers	HSMMtube	muscle
26	chr6:86115200-86117400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:86115200-86117600	Enhancers	HMEC	breast
28	chr6:86115400-86115800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:86115400-86115800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:86115400-86115800	Flanking Active TSS	Colonic Mucosa	Colon
31	chr6:86115400-86115800	Enhancers	Lung	lung
32	chr6:86115400-86115800	Flanking Active TSS	A549	lung
33	chr6:86115400-86115800	Flanking Active TSS	GM12878-XiMat	blood
34	chr6:86115400-86116200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:86115400-86116600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:86115400-86116600	Flanking Active TSS	HepG2	liver
37	chr6:86115400-86116600	Enhancers	HUVEC	blood vessel
38	chr6:86115400-86116600	Enhancers	NH-A	brain
39	chr6:86115400-86117000	Enhancers	Osteobl	bone
40	chr6:86115600-86116200	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr6:86115600-86116600	Enhancers	Liver	Liver
42	chr6:86115600-86116600	Enhancers	HSMM	muscle
43	chr6:86115600-86116800	Enhancers	Hela-S3	cervix
44	chr6:86115600-86117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:86115600-86117000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:86115600-86117200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:86115600-86118000	Enhancers	NHEK	skin
48	chr6:86115600-86123200	Weak transcription	Ovary	ovary

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