Variant report

Variant	nsv886357
Chromosome Location	chr6:93274584-93348842
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EPHA7-2	chr6:93299040-93299050	XLOC_005783
2	lnc-MANEA-18	chr6:93346654-93346669	NONHSAT114009
3	lnc-MANEA-18	chr6:93326547-93326634	NONHSAT114009
4	lnc-MANEA-18	chr6:93336766-93336870	NONHSAT114009
5	lnc-EPHA7-2	chr6:93299496-93299804	XLOC_005783

Extended variants
information (count: 802 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:802 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9362985	chr6:93274584-93274585	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs547198315	chr6:93274591-93274592	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572663336	chr6:93274599-93274600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs148049821	chr6:93274728-93274729	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201951787	chr6:93274761-93274762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs140878264	chr6:93274772-93274773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs574817726	chr6:93274787-93274788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs543462339	chr6:93274823-93274824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370709034	chr6:93274845-93274846	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113422565	chr6:93274851-93274852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs563296981	chr6:93274890-93274891	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs532485784	chr6:93274903-93274904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs377661960	chr6:93274917-93274918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183578866	chr6:93274924-93274925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545877041	chr6:93275022-93275023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs565592467	chr6:93275023-93275024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs188118561	chr6:93275030-93275031	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs527489928	chr6:93275061-93275062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs547708208	chr6:93275174-93275175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs146263279	chr6:93275213-93275214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs533061546	chr6:93275229-93275230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs191751010	chr6:93275250-93275251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs549826923	chr6:93275304-93275305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs115043868	chr6:93275326-93275327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs118134495	chr6:93275362-93275363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs138806829	chr6:93275398-93275399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs563596000	chr6:93275418-93275419	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs566311974	chr6:93275419-93275420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs73517119	chr6:93275529-93275530	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555105405	chr6:93275585-93275586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs147263497	chr6:93275636-93275637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs183966392	chr6:93275637-93275638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs138829591	chr6:93275645-93275646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs188107642	chr6:93275746-93275747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545938603	chr6:93275748-93275749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs559410481	chr6:93275754-93275755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs573246380	chr6:93275755-93275756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs192555031	chr6:93275815-93275816	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs561105232	chr6:93275830-93275831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs529963183	chr6:93275832-93275833	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs114597811	chr6:93275843-93275844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs184782211	chr6:93275852-93275853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs532143276	chr6:93275853-93275854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs190335081	chr6:93275877-93275878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs783853	chr6:93275887-93275888	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs144682175	chr6:93275898-93275899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs552004951	chr6:93275911-93275912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs548519229	chr6:93275919-93275920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs571827014	chr6:93275923-93275924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs370950964	chr6:93275930-93275931	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Neuropathy	19664229	CNVD
Neurodevelopmental disorder	22521361	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Basal cell lymphoma	17170743	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93273600-93276600	Enhancers	Fetal Heart	heart
2	chr6:93276600-93277800	Weak transcription	Fetal Heart	heart
3	chr6:93277800-93278400	Enhancers	Fetal Heart	heart
4	chr6:93278400-93279000	Enhancers	Fetal Lung	lung
5	chr6:93279000-93280000	Weak transcription	Fetal Lung	lung
6	chr6:93280000-93280200	Enhancers	Fetal Lung	lung
7	chr6:93286400-93287800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:93286600-93287000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:93286600-93287800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:93286800-93287800	Enhancers	HSMM	muscle
11	chr6:93286800-93287800	Enhancers	NH-A	brain
12	chr6:93287000-93287400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:93287000-93287400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:93287000-93287400	Enhancers	Hela-S3	cervix
15	chr6:93287400-93288000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:93296000-93296200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:93296800-93300200	Enhancers	Hela-S3	cervix
18	chr6:93300200-93301200	Weak transcription	Hela-S3	cervix
19	chr6:93301200-93301800	Enhancers	Hela-S3	cervix
20	chr6:93307600-93308000	Enhancers	Primary T cells from cord blood	blood
21	chr6:93308000-93308400	Weak transcription	Primary T cells from cord blood	blood
22	chr6:93308400-93310600	Enhancers	Primary T cells from cord blood	blood
23	chr6:93318200-93318600	Enhancers	Fetal Brain Male	brain
24	chr6:93321400-93321600	ZNF genes & repeats	Pancreas	Pancrea
25	chr6:93326400-93326600	Enhancers	Primary T cells from cord blood	blood
26	chr6:93326600-93327200	Weak transcription	Primary T cells from cord blood	blood
27	chr6:93327000-93328000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:93327000-93328600	Enhancers	Dnd41	blood
29	chr6:93327200-93329000	Enhancers	Primary T cells from cord blood	blood
30	chr6:93327600-93328400	Enhancers	Fetal Thymus	thymus
31	chr6:93328000-93328400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:93328400-93328800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:93344000-93344200	Enhancers	Fetal Brain Female	brain
34	chr6:93347200-93347600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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