Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455536	0.89[ASN][1000 genomes]
rs10755497	0.88[ASN][1000 genomes]
rs12203198	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206185	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12213523	0.84[ASN][1000 genomes]
rs12216384	0.88[ASN][1000 genomes]
rs1590771	0.86[ASN][1000 genomes]
rs1590772	0.84[ASN][1000 genomes]
rs1927872	0.84[ASN][1000 genomes]
rs7753396	0.88[ASN][1000 genomes]
rs7758537	0.89[ASN][1000 genomes]
rs7762559	0.88[ASN][1000 genomes]
rs7771681	0.88[ASN][1000 genomes]
rs9294533	0.88[ASN][1000 genomes]
rs9345243	0.87[ASN][1000 genomes]
rs9345244	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9345245	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9345246	0.88[ASN][1000 genomes]
rs9353921	0.88[ASN][1000 genomes]
rs9353922	0.88[ASN][1000 genomes]
rs9362981	0.88[ASN][1000 genomes]
rs9362983	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9362984	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886356	chr6:93179624-93293303	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886357	chr6:93274584-93348842	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9362985	PM20D2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93273600-93276600	Enhancers	Fetal Heart	heart

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