Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455536	0.85[ASN][1000 genomes]
rs10755497	0.89[ASN][1000 genomes]
rs12206185	0.92[ASN][1000 genomes]
rs12213523	0.89[ASN][1000 genomes]
rs12216384	0.89[ASN][1000 genomes]
rs1590771	0.91[ASN][1000 genomes]
rs1590772	0.89[ASN][1000 genomes]
rs1927872	0.89[ASN][1000 genomes]
rs6935450	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7753396	0.89[ASN][1000 genomes]
rs7758537	0.85[ASN][1000 genomes]
rs7762001	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7762559	0.89[ASN][1000 genomes]
rs7771681	0.89[ASN][1000 genomes]
rs9294533	0.89[ASN][1000 genomes]
rs9345243	0.80[ASN][1000 genomes]
rs9345244	0.92[ASN][1000 genomes]
rs9345245	0.92[ASN][1000 genomes]
rs9345246	0.89[ASN][1000 genomes]
rs9345250	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9353921	0.89[ASN][1000 genomes]
rs9353922	0.89[ASN][1000 genomes]
rs9362981	0.89[ASN][1000 genomes]
rs9362983	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9362984	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9362985	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845487	chr6:93099906-93306808	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886355	chr6:93166766-93530757	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1018402	chr6:93173579-93855804	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886357	chr6:93274584-93348842	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	esv3326849	chr6:93286280-93299783	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:93296800-93300200	Enhancers	Hela-S3	cervix

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