Variant report

Variant	nsv888096
Chromosome Location	chr7:61096641-61235937
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1089 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:1089 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11135615	chr7:61096641-61096642	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531402246	chr7:61096644-61096645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs75998583	chr7:61096645-61096646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12537486	chr7:61096648-61096649	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567976622	chr7:61096651-61096652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535760970	chr7:61096653-61096654	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192651021	chr7:61096659-61096660	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11135616	chr7:61096661-61096662	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs539100561	chr7:61096662-61096663	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547591778	chr7:61096670-61096671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376676348	chr7:61096677-61096678	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113884126	chr7:61096679-61096680	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567611015	chr7:61096685-61096686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs568306930	chr7:61096696-61096697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76386957	chr7:61096700-61096701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187615020	chr7:61096703-61096704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575004422	chr7:61096704-61096705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542514665	chr7:61096708-61096709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs192598188	chr7:61096717-61096718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs77017995	chr7:61096718-61096719	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538322248	chr7:61096719-61096720	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs142324731	chr7:61096720-61096721	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564221572	chr7:61096722-61096723	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531728640	chr7:61096725-61096726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538991739	chr7:61096730-61096731	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs568246338	chr7:61096731-61096732	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111440093	chr7:61096741-61096742	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201796619	chr7:61096747-61096748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78566766	chr7:61096748-61096749	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558663457	chr7:61096749-61096750	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373845447	chr7:61096750-61096751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs565880408	chr7:61096754-61096755	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368182643	chr7:61096755-61096756	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539416888	chr7:61096756-61096757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557820374	chr7:61096759-61096760	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569733268	chr7:61096761-61096762	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs534935792	chr7:61096763-61096764	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs537165241	chr7:61096766-61096767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556748700	chr7:61096774-61096775	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574986965	chr7:61096776-61096777	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542099956	chr7:61096782-61096783	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74983105	chr7:61096785-61096786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554735780	chr7:61096793-61096794	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs572679858	chr7:61096797-61096798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs545780493	chr7:61096813-61096814	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs564157935	chr7:61096820-61096821	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201180833	chr7:61096821-61096822	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576079247	chr7:61096828-61096829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543517447	chr7:61096833-61096834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562079573	chr7:61096836-61096837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD

Chromatin state (count:158 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver
9	chr7:61097000-61099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:61097200-61097800	ZNF genes & repeats	Psoas Muscle	Psoas
11	chr7:61097400-61098000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr7:61097600-61098000	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr7:61097600-61098000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr7:61097800-61099200	Weak transcription	Psoas Muscle	Psoas
15	chr7:61098000-61099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:61098000-61099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:61098000-61099400	Weak transcription	Liver	Liver
18	chr7:61098000-61099400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:61098200-61099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:61099200-61100400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:61099200-61100400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr7:61099200-61100400	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr7:61099200-61100400	ZNF genes & repeats	Thymus	Thymus
24	chr7:61099400-61100000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr7:61099400-61100200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr7:61099400-61100200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr7:61099400-61100400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr7:61099400-61100400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:61099400-61100400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:61099400-61100400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
32	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr7:61099400-61100400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
34	chr7:61099400-61100400	ZNF genes & repeats	Liver	Liver
35	chr7:61099400-61100400	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr7:61099400-61100400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
37	chr7:61099400-61100400	Bivalent/Poised TSS	Right Ventricle	heart
38	chr7:61099400-61100400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr7:61099600-61099800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:61099600-61099800	ZNF genes & repeats	Placenta	Placenta
41	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
42	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
43	chr7:61099600-61100200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
44	chr7:61099600-61100200	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr7:61099600-61100200	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr7:61099600-61100400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:61099600-61100400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr7:61099600-61100400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
49	chr7:61099600-61100400	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr7:61099600-61100400	ZNF genes & repeats	Colon Smooth Muscle	Colon

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