Variant report

Variant	rs11135615
Chromosome Location	chr7:61096641-61096642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11135616	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35358987	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341268	chr7:61055474-61785676	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv428166	chr7:61056610-61276601	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
3	nsv436562	chr7:61063348-61761904	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1029547	chr7:61063962-61288808	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1018596	chr7:61063962-61760691	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1024753	chr7:61063962-61779286	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1031202	chr7:61063962-61814080	Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024632	chr7:61063962-61836567	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034739	chr7:61063962-61846655	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1027387	chr7:61063962-61888128	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1021413	chr7:61063962-61987338	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1023301	chr7:61063962-62049599	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1028986	chr7:61063962-62059428	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv607113	chr7:61065279-61110576	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv888080	chr7:61070271-61202279	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv1021890	chr7:61072037-61779286	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv523744	chr7:61072037-61852895	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv888081	chr7:61074140-61209425	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv888082	chr7:61074194-61138655	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
20	nsv607114	chr7:61074194-61244229	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv888083	chr7:61077934-61138655	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv888084	chr7:61077934-61163004	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
23	nsv888085	chr7:61077934-61736882	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv888086	chr7:61077934-61913330	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv888087	chr7:61084546-61235937	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
26	nsv888088	chr7:61084546-61245220	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
27	esv5257	chr7:61085176-61135838	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription	n/a	n/a	inside rSNPs	diseases
28	esv3394002	chr7:61086010-61104408	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
29	esv3323577	chr7:61086010-61111908	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
30	esv3358443	chr7:61086010-61119008	Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
31	esv3338233	chr7:61086010-61120208	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
32	esv3438409	chr7:61086710-61105308	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
33	esv3377296	chr7:61086810-61105308	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
34	nsv888089	chr7:61089583-61202279	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
35	nsv888090	chr7:61089583-61252967	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
36	nsv831012	chr7:61090236-61275278	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
37	esv1004067	chr7:61091869-61244970	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
38	esv20699	chr7:61092149-61245352	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
39	nsv888091	chr7:61092808-61257535	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
40	nsv888092	chr7:61092808-61736882	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv3419332	chr7:61095278-61241278	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
42	esv3410313	chr7:61096238-61265573	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
43	esv3430398	chr7:61096294-61968926	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
44	esv3430481	chr7:61096480-61096746	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
45	nsv888093	chr7:61096641-61163004	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
46	nsv888094	chr7:61096641-61192376	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
47	nsv888095	chr7:61096641-61209425	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
48	nsv888096	chr7:61096641-61235937	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
49	nsv888097	chr7:61096641-61252967	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
50	nsv888098	chr7:61096641-61268195	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11135615	ZNF679	cis	cerebellum	SCAN
rs11135615	ZNF680	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver

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