Variant report

Variant	nsv892864
Chromosome Location	chr9:27176554-27296705
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1010)
CpG islands
(count:244)
Chromatin interactive
region (count:9)
LncRNA
region (count:40)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1010 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:27261532-27261892	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:27276433-27276779	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:27276480-27276766	K562	blood:	n/a	n/a
4	BATF	chr9:27194446-27194714	GM12878	blood:	n/a	chr9:27194607-27194618
5	BHLHE40	chr9:27281155-27281334	K562	blood:	n/a	n/a
6	BHLHE40	chr9:27261364-27261936	HepG2	liver:	n/a	n/a
7	BRCA1	chr9:27261881-27262104	Hela-S3	cervix:	n/a	n/a
8	BRCA1	chr9:27181370-27181714	Hela-S3	cervix:	n/a	n/a
9	CBX3	chr9:27194266-27194999	HCT-116	colon:	n/a	n/a
10	CBX3	chr9:27193803-27195211	HCT-116	colon:	n/a	n/a
11	CEBPB	chr9:27183834-27184110	HepG2	liver:	n/a	n/a
12	CEBPB	chr9:27227150-27227597	Hela-S3	cervix:	n/a	chr9:27227337-27227348
13	CEBPB	chr9:27227147-27227727	IMR90	lung:	n/a	chr9:27227337-27227348
14	CEBPB	chr9:27198271-27198664	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr9:27248999-27249274	HepG2	liver:	n/a	chr9:27249140-27249151
16	CEBPB	chr9:27213771-27214035	IMR90	lung:	n/a	chr9:27213910-27213921 chr9:27213908-27213921 chr9:27213908-27213921
17	CEBPB	chr9:27184636-27184875	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr9:27227180-27227530	K562	blood:	n/a	chr9:27227337-27227348
19	CEBPB	chr9:27258776-27259077	A549	lung:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
20	CEBPB	chr9:27205280-27205603	A549	lung:	n/a	n/a
21	CEBPB	chr9:27183814-27184166	IMR90	lung:	n/a	n/a
22	CEBPB	chr9:27183927-27184064	K562	blood:	n/a	n/a
23	CEBPB	chr9:27227230-27227494	K562	blood:	n/a	chr9:27227337-27227348
24	CEBPB	chr9:27238842-27239132	HepG2	liver:	n/a	chr9:27238966-27238975
25	CEBPB	chr9:27183807-27184156	A549	lung:	n/a	n/a
26	CEBPB	chr9:27258771-27259071	K562	blood:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
27	CEBPB	chr9:27194317-27195157	HCT-116	colon:	n/a	n/a
28	CEBPB	chr9:27206129-27206382	HepG2	liver:	n/a	chr9:27206247-27206258 chr9:27206247-27206260
29	CEBPB	chr9:27181340-27181711	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr9:27258775-27259094	HepG2	liver:	n/a	chr9:27258921-27258932 chr9:27258921-27258934 chr9:27258921-27258934
31	CEBPB	chr9:27194269-27195045	HCT-116	colon:	n/a	n/a
32	CEBPB	chr9:27227200-27227514	A549	lung:	n/a	chr9:27227337-27227348
33	CEBPB	chr9:27183839-27184160	K562	blood:	n/a	n/a
34	CEBPB	chr9:27261315-27262115	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr9:27261315-27261855	HepG2	liver:	n/a	n/a
36	CEBPB	chr9:27272984-27273198	A549	lung:	n/a	chr9:27273158-27273171
37	CEBPB	chr9:27194367-27194834	Hela-S3	cervix:	n/a	n/a
38	CEBPB	chr9:27248839-27249287	IMR90	lung:	n/a	chr9:27249140-27249151 chr9:27248881-27248898
39	CEBPB	chr9:27183716-27184199	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr9:27227195-27227527	HepG2	liver:	n/a	chr9:27227337-27227348
41	CEBPB	chr9:27181338-27181682	IMR90	lung:	n/a	n/a
42	CEBPB	chr9:27248970-27249261	A549	lung:	n/a	chr9:27249140-27249151
43	CEBPB	chr9:27203351-27203698	K562	blood:	n/a	chr9:27203510-27203519 chr9:27203510-27203519 chr9:27203510-27203519 chr9:27203508-27203519 chr9:27203510-27203519
44	CEBPB	chr9:27194340-27195505	IMR90	lung:	n/a	n/a
45	CEBPB	chr9:27183887-27184087	K562	blood:	n/a	n/a
46	CEBPB	chr9:27205299-27205573	HepG2	liver:	n/a	n/a
47	CEBPB	chr9:27205273-27205571	IMR90	lung:	n/a	n/a
48	CEBPB	chr9:27261286-27261670	MCF-7	breast:	n/a	n/a
49	CHD2	chr9:27232395-27232413	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr9:27276560-27276710	HRE	kidney:	n/a	chr9:27276618-27276636 chr9:27276620-27276633 chr9:27276619-27276635 chr9:27276624-27276633 chr9:27276613-27276634

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:27292606-27292656	NHBE	bronchial:	n/a
2	chr9:27282580-27282630	HAEpiC	amniotic membrane:	n/a
3	chr9:27248473-27248523	SK-N-SH_RA	brain:	n/a
4	chr9:27282580-27282630	GM19239	blood:	n/a
5	chr9:27282580-27282630	HRPEpiC	eye:	n/a
6	chr9:27292606-27292656	IMR90	lung:	fetal
7	chr9:27282580-27282630	AG04449	skin:	fetal
8	chr9:27292606-27292656	HAEpiC	amniotic membrane:	n/a
9	chr9:27248473-27248523	U87	brain:	n/a
10	chr9:27292606-27292656	HRCEpiC	kidney:	n/a
11	chr9:27282776-27282826	AG10803	skin:	n/a
12	chr9:27282580-27282630	SAEC	small airway:	n/a
13	chr9:27282580-27282630	GM12891	blood:	n/a
14	chr9:27248473-27248523	HNPCEpiC	eye:	n/a
15	chr9:27292606-27292656	BJ	skin:	n/a
16	chr9:27282776-27282826	MCF-7	breast:	n/a
17	chr9:27282580-27282630	SK-N-SH_RA	brain:	n/a
18	chr9:27282580-27282630	ovcar-3	ovarian:	n/a
19	chr9:27248473-27248523	Hepatocyte	liver:	n/a
20	chr9:27282776-27282826	HUVEC	blood vessel:	n/a
21	chr9:27292606-27292656	ProgFib	skin:	n/a
22	chr9:27292606-27292656	PFSK-1	brain:	n/a
23	chr9:27292606-27292656	AoSMC	blood vessel:	n/a
24	chr9:27282776-27282826	MCF10A-Er-Src	breast:	n/a
25	chr9:27292606-27292656	HCM	heart:	n/a
26	chr9:27282776-27282826	HRCEpiC	kidney:	n/a
27	chr9:27248473-27248523	HIPEpiC	eye:	n/a
28	chr9:27282776-27282826	HEK293	kidney:	embryo
29	chr9:27292606-27292656	U87	brain:	n/a
30	chr9:27248473-27248523	HCPEpiC	choroid plexus:	n/a
31	chr9:27282776-27282826	NHBE	bronchial:	n/a
32	chr9:27282776-27282826	SAEC	small airway:	n/a
33	chr9:27292606-27292656	MCF-7	breast:	n/a
34	chr9:27282580-27282630	HEK293	kidney:	embryo
35	chr9:27282580-27282630	AG04450	lung:	fetal
36	chr9:27292606-27292656	HIPEpiC	eye:	n/a
37	chr9:27248473-27248523	PFSK-1	brain:	n/a
38	chr9:27282580-27282630	HUVEC	blood vessel:	n/a
39	chr9:27248473-27248523	HRE	kidney:	n/a
40	chr9:27292606-27292656	HMEC	breast:	n/a
41	chr9:27282580-27282630	NH-A	brain:	n/a
42	chr9:27282776-27282826	HCPEpiC	choroid plexus:	n/a
43	chr9:27282580-27282630	GM06990	blood:	n/a
44	chr9:27282776-27282826	H1-hESC	embryonic stem cell:	embryo
45	chr9:27248473-27248523	Hela-S3	cervix:	n/a
46	chr9:27292606-27292656	HRE	kidney:	n/a
47	chr9:27292606-27292656	HEEpiC	esophagus:	n/a
48	chr9:27248473-27248523	T-47D	breast:	n/a
49	chr9:27292606-27292656	AG09319	gingival:	n/a
50	chr9:27282776-27282826	CMK	blood:	n/a

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:27033902..27034442-chr9:27247489..27248319,2	MCF-7	breast:
2	chr9:27033540..27034483-chr9:27275947..27276717,3	MCF-7	breast:
3	chr9:27280860..27282970-chr9:27289180..27290823,2	K562	blood:
4	chr9:27033503..27034503-chr9:27276144..27277065,4	K562	blood:
5	chr9:27247560..27248337-chr9:27547652..27548456,2	MCF-7	breast:
6	chr9:27275368..27278167-chr9:27278207..27280246,2	MCF-7	breast:
7	chr9:27275368..27278167-chr9:27278207..27280246,2	MCF-7	breast:
8	chr9:27247423..27248703-chr9:27275999..27276820,3	MCF-7	breast:
9	chr9:27247423..27248703-chr9:27275999..27276820,3	MCF-7	breast:

(count:40 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf11-1	chr9:27272328-27272791	l_3745_NR_026687
2	lnc-C9orf11-1	chr9:27264088-27264284	l_3745_NR_026687
3	lnc-C9orf11-1	chr9:27270766-27270922	NONHSAT130610
4	lnc-TEK-2	chr9:27245472-27245673	XLOC_007307
5	lnc-MOB3B-1	chr9:27294314-27294493	NONHSAT130613
6	lnc-C9orf11-1	chr9:27267549-27267774	NONHSAT130610
7	lnc-MOB3B-1	chr9:27296611-27296738	NONHSAT130613
8	lnc-C9orf11-1	chr9:27251828-27252034	l_3745_NR_026687
9	lnc-C9orf11-1	chr9:27261925-27262086	l_3745_NR_026687
10	lnc-C9orf11-1	chr9:27265780-27265948	NONHSAT130610
11	lnc-C9orf11-1	chr9:27258419-27258515	NONHSAT130610
12	lnc-C9orf11-1	chr9:27268359-27268726	l_3745_NR_026687
13	lnc-C9orf11-1	chr9:27253207-27253263	NONHSAT130610
14	lnc-C9orf11-1	chr9:27270426-27270613	l_3745_NR_026687
15	lnc-C9orf11-1	chr9:27268359-27268726	NONHSAT130610
16	lnc-C9orf11-1	chr9:27253207-27253263	l_3745_NR_026687
17	lnc-C9orf11-1	chr9:27248410-27248517	l_3745_NR_026687
18	lnc-C9orf11-1	chr9:27261925-27262086	NONHSAT130610
19	lnc-C9orf11-1	chr9:27252710-27252801	l_3745_NR_026687
20	lnc-C9orf11-1	chr9:27248693-27248766	l_3745_NR_026687
21	lnc-C9orf11-1	chr9:27266962-27267108	NONHSAT130610
22	lnc-C9orf11-1	chr9:27248693-27248766	NONHSAT130610
23	lnc-TEK-2	chr9:27245986-27246282	XLOC_007307
24	lnc-C9orf11-1	chr9:27264088-27264284	NONHSAT130610
25	lnc-C9orf11-1	chr9:27258419-27258515	l_3745_NR_026687
26	lnc-C9orf11-1	chr9:27270426-27270613	NONHSAT130610
27	lnc-C9orf11-1	chr9:27248410-27248517	NONHSAT130610
28	lnc-C9orf11-1	chr9:27266962-27267108	l_3745_NR_026687
29	lnc-C9orf11-1	chr9:27237388-27237508	NONHSAT130610
30	lnc-C9orf11-1	chr9:27252710-27252801	NONHSAT130610
31	lnc-C9orf11-1	chr9:27237388-27237508	l_3745_NR_026687
32	lnc-C9orf11-1	chr9:27272328-27272791	NONHSAT130610
33	lnc-C9orf11-1	chr9:27265780-27265948	l_3745_NR_026687
34	lnc-C9orf11-1	chr9:27235684-27235760	l_3745_NR_026687
35	lnc-IFT74-6	chr9:27210325-27210624	NONHSAT130609
36	lnc-C9orf11-1	chr9:27267549-27267774	l_3745_NR_026687
37	lnc-C9orf11-1	chr9:27251828-27252034	NONHSAT130610
38	lnc-MOB3B-1	chr9:27292411-27292485	NONHSAT130613
39	lnc-C9orf11-1	chr9:27270766-27270922	l_3745_NR_026687
40	lnc-C9orf11-1	chr9:27235682-27235760	NONHSAT130610

No data

Variant related genes	Relation type
LINC00032	TF binding region
ENSG00000232867	TF binding region
RNA5SP280	TF binding region
LINC00032	CpG island
ENSG00000232867	CpG island
RNA5SP280	CpG island
ENSG00000231459	chromatin interactions
ATP6V1B2	miRNA target sites

Extended variants
information (count: 4266 )
Associated
traits (count: 134 )

Variant overlapped rSNPs/rCNVs (count:4266 , 50 per page) page: 1 2 3 4 5 6 7 ... 86

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2208637	chr9:27176554-27176555	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs565104323	chr9:27176563-27176564	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs192352791	chr9:27176609-27176610	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs371490570	chr9:27176615-27176616	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs565772350	chr9:27176622-27176623	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs111964955	chr9:27176625-27176626	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562330642	chr9:27176673-27176674	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs529754112	chr9:27176693-27176694	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs80148228	chr9:27176830-27176831	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184734394	chr9:27176836-27176837	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs12344397	chr9:27176853-27176854	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs552460069	chr9:27176872-27176873	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs2224530	chr9:27176886-27176887	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs538133559	chr9:27176935-27176936	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188639871	chr9:27176986-27176987	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556850244	chr9:27176987-27176988	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs181470623	chr9:27176990-27176991	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs535412697	chr9:27176993-27176994	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs553759499	chr9:27177020-27177021	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541869045	chr9:27177077-27177078	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs572173440	chr9:27177151-27177152	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs546302132	chr9:27177160-27177161	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs186011866	chr9:27177175-27177176	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs577004167	chr9:27177189-27177190	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs544171648	chr9:27177231-27177232	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs373126296	chr9:27177355-27177356	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs530017076	chr9:27177356-27177357	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs541803087	chr9:27177371-27177372	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs7025172	chr9:27177372-27177373	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs527352951	chr9:27177377-27177378	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189297163	chr9:27177380-27177381	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs182590845	chr9:27177429-27177430	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs187193261	chr9:27177449-27177450	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190876681	chr9:27177450-27177451	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs79110172	chr9:27177467-27177468	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs568375138	chr9:27177496-27177497	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs547551782	chr9:27177519-27177520	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556343681	chr9:27177523-27177524	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs76683341	chr9:27177544-27177545	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs12345521	chr9:27177567-27177568	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs370308948	chr9:27177577-27177578	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs141185723	chr9:27177610-27177611	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs577876120	chr9:27177611-27177612	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs539538782	chr9:27177615-27177616	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs182636976	chr9:27177621-27177622	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs538771558	chr9:27177662-27177663	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs544344904	chr9:27177663-27177664	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs200681713	chr9:27177762-27177763	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs201900988	chr9:27177772-27177773	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs574748261	chr9:27177773-27177774	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:134)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Epilepsy	22083797	CNVD
Cancer	22183965	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Lung cancer	20668451	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	21215367	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:745 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27152400-27181600	Weak transcription	Adipose Nuclei	Adipose
3	chr9:27158200-27183600	Weak transcription	Lung	lung
4	chr9:27162800-27177800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:27163000-27178000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:27165400-27198200	Weak transcription	Ovary	ovary
7	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:27165800-27181600	Weak transcription	Fetal Lung	lung
9	chr9:27166000-27183600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
11	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:27173200-27179200	Weak transcription	NH-A	brain
14	chr9:27174800-27177000	Weak transcription	HUVEC	blood vessel
15	chr9:27174800-27177400	Weak transcription	Left Ventricle	heart
16	chr9:27174800-27177600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:27174800-27183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:27174800-27183800	Weak transcription	Right Ventricle	heart
19	chr9:27175000-27176800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:27176200-27177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:27176400-27176800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:27176400-27178800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:27176800-27177200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr9:27176800-27178000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:27177000-27177400	Enhancers	HUVEC	blood vessel
26	chr9:27177400-27177600	ZNF genes & repeats	Left Ventricle	heart
27	chr9:27177400-27179200	Weak transcription	HUVEC	blood vessel
28	chr9:27177600-27178400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
29	chr9:27177600-27179600	Weak transcription	Left Ventricle	heart
30	chr9:27177800-27178400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:27178000-27178400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr9:27178000-27179600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:27178400-27179400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:27178400-27180800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:27178400-27183600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:27178400-27197200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:27178800-27179600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:27179000-27180000	Enhancers	Osteobl	bone
39	chr9:27179000-27180200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr9:27179000-27182400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:27179200-27179800	Enhancers	HUVEC	blood vessel
42	chr9:27179200-27180000	Enhancers	NH-A	brain
43	chr9:27179400-27179800	Enhancers	HSMMtube	muscle
44	chr9:27179400-27180400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:27179400-27182400	Enhancers	HSMM	muscle
46	chr9:27179400-27184800	Enhancers	NHEK	skin
47	chr9:27179600-27179800	Enhancers	Left Ventricle	heart
48	chr9:27179600-27179800	Enhancers	Hela-S3	cervix
49	chr9:27179600-27179800	Enhancers	NHLF	lung
50	chr9:27179600-27180000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links