Variant report

Variant	rs541869045
Chromosome Location	chr9:27177077-27177078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv6512	chr9:27155677-27200455	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892864	chr9:27176554-27296705	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:27152400-27181600	Weak transcription	Adipose Nuclei	Adipose
3	chr9:27158200-27183600	Weak transcription	Lung	lung
4	chr9:27162800-27177800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:27163000-27178000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:27165400-27198200	Weak transcription	Ovary	ovary
7	chr9:27165400-27219200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:27165800-27181600	Weak transcription	Fetal Lung	lung
9	chr9:27166000-27183600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:27166200-27192200	Weak transcription	Fetal Stomach	stomach
11	chr9:27166200-27205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:27166200-27229000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:27173200-27179200	Weak transcription	NH-A	brain
14	chr9:27174800-27177400	Weak transcription	Left Ventricle	heart
15	chr9:27174800-27177600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:27174800-27183200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:27174800-27183800	Weak transcription	Right Ventricle	heart
18	chr9:27176200-27177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:27176400-27178800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:27176800-27177200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:27176800-27178000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:27177000-27177400	Enhancers	HUVEC	blood vessel

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