Variant report

Variant	nsv894671
Chromosome Location	chr9:140505476-140519654
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1547)
CpG islands
(count:551)
Chromatin interactive
region (count:55)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1547 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:140512995-140513194	K562	blood:	n/a	n/a
2	ARID3A	chr9:140514701-140514718	K562	blood:	n/a	n/a
3	ATF1	chr9:140512908-140513272	K562	blood:	n/a	n/a
4	ATF2	chr9:140512882-140513291	GM12878	blood:	n/a	n/a
5	ATF2	chr9:140512599-140513361	GM12878	blood:	n/a	n/a
6	ATF2	chr9:140512846-140513342	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr9:140513019-140513356	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:140512666-140513485	A549	lung:	n/a	chr9:140513400-140513409
9	ATF3	chr9:140506272-140506563	K562	blood:	n/a	n/a
10	ATF3	chr9:140506242-140506580	K562	blood:	n/a	n/a
11	ATF3	chr9:140513089-140513438	A549	lung:	n/a	chr9:140513400-140513409
12	ATF3	chr9:140513171-140513459	H1-hESC	embryonic stem cell:	n/a	chr9:140513400-140513409
13	ATF3	chr9:140512941-140513477	K562	blood:	n/a	chr9:140513400-140513409
14	ATF3	chr9:140513263-140513470	GM12878	blood:	n/a	chr9:140513400-140513409
15	ATF3	chr9:140513079-140513492	K562	blood:	n/a	chr9:140513400-140513409
16	ATF3	chr9:140513192-140513485	HepG2	liver:	n/a	chr9:140513400-140513409
17	BACH1	chr9:140506296-140506570	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr9:140512354-140512455	K562	blood:	n/a	n/a
19	BCL3	chr9:140506032-140508286	A549	lung:	n/a	n/a
20	BCL3	chr9:140512082-140513429	A549	lung:	n/a	n/a
21	BCL3	chr9:140512432-140513462	GM12878	blood:	n/a	n/a
22	BCL3	chr9:140505934-140508793	A549	lung:	n/a	n/a
23	BCL3	chr9:140512554-140513408	A549	lung:	n/a	n/a
24	BCLAF1	chr9:140512590-140513424	GM12878	blood:	n/a	n/a
25	BHLHE40	chr9:140506261-140506575	A549	lung:	n/a	n/a
26	BHLHE40	chr9:140506203-140506789	K562	blood:	n/a	n/a
27	BHLHE40	chr9:140506344-140506505	GM12878	blood:	n/a	n/a
28	BHLHE40	chr9:140512827-140513435	GM12878	blood:	n/a	n/a
29	BHLHE40	chr9:140513027-140513435	HepG2	liver:	n/a	n/a
30	BHLHE40	chr9:140512971-140513406	K562	blood:	n/a	n/a
31	BHLHE40	chr9:140506215-140506621	HepG2	liver:	n/a	n/a
32	BHLHE40	chr9:140513901-140514002	GM12878	blood:	n/a	n/a
33	BRCA1	chr9:140506306-140506994	Hela-S3	cervix:	n/a	n/a
34	BRCA1	chr9:140513152-140513282	HepG2	liver:	n/a	n/a
35	BRCA1	chr9:140513844-140513980	HepG2	liver:	n/a	n/a
36	BRCA1	chr9:140513909-140514238	Hela-S3	cervix:	n/a	n/a
37	BRCA1	chr9:140512934-140513450	Hela-S3	cervix:	n/a	n/a
38	BRCA1	chr9:140513086-140513352	GM12878	blood:	n/a	n/a
39	BRCA1	chr9:140512436-140512563	Hela-S3	cervix:	n/a	n/a
40	CBX3	chr9:140512733-140513293	K562	blood:	n/a	n/a
41	CCNT2	chr9:140506201-140506432	K562	blood:	n/a	n/a
42	CCNT2	chr9:140508742-140508951	K562	blood:	n/a	n/a
43	CCNT2	chr9:140513735-140513845	K562	blood:	n/a	n/a
44	CCNT2	chr9:140512723-140513535	K562	blood:	n/a	n/a
45	CCNT2	chr9:140509152-140509313	K562	blood:	n/a	n/a
46	CCNT2	chr9:140506758-140506912	K562	blood:	n/a	n/a
47	CEBPB	chr9:140512587-140512863	H1-hESC	embryonic stem cell:	n/a	n/a
48	CEBPB	chr9:140512742-140513222	K562	blood:	n/a	n/a
49	CEBPB	chr9:140512554-140513344	MCF-7	breast:	n/a	n/a
50	CEBPB	chr9:140512805-140513316	GM12878	blood:	n/a	n/a

(count:551 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140513215-140513265	PrEC	prostate:	n/a
2	chr9:140513113-140513163	SK-N-MC	brain:	n/a
3	chr9:140513215-140513265	PrEC	prostate:	n/a
4	chr9:140513113-140513163	SK-N-MC	brain:	n/a
5	chr9:140513215-140513265	AG04449	skin:	fetal
6	chr9:140515874-140515924	K562	blood:	n/a
7	chr9:140513113-140513163	NHDF-neo	bronchial:	n/a
8	chr9:140513113-140513163	A549	lung:	n/a
9	chr9:140514016-140514066	SKMC	muscle:	n/a
10	chr9:140512513-140512563	HCF	heart:	n/a
11	chr9:140512815-140512865	U87	brain:	n/a
12	chr9:140512513-140512563	SK-N-SH_RA	brain:	n/a
13	chr9:140512513-140512563	HCM	heart:	n/a
14	chr9:140512815-140512865	IMR90	lung:	fetal
15	chr9:140513215-140513265	HNPCEpiC	eye:	n/a
16	chr9:140515874-140515924	IMR90	lung:	fetal
17	chr9:140514393-140514443	ProgFib	skin:	n/a
18	chr9:140513215-140513265	GM12878	blood:	n/a
19	chr9:140512513-140512563	HEK293	kidney:	embryo
20	chr9:140510480-140510530	SK-N-SH	brain:	n/a
21	chr9:140510480-140510530	ECC-1	luminal epithelium:	n/a
22	chr9:140514393-140514443	HCPEpiC	choroid plexus:	n/a
23	chr9:140514393-140514443	H1-hESC	embryonic stem cell:	embryo
24	chr9:140515874-140515924	ovcar-3	ovarian:	n/a
25	chr9:140513215-140513265	NB4	blood:	n/a
26	chr9:140514393-140514443	GM12878	blood:	n/a
27	chr9:140513215-140513265	Hela-S3	cervix:	n/a
28	chr9:140512513-140512563	Hela-S3	cervix:	n/a
29	chr9:140512513-140512563	Hepatocyte	liver:	n/a
30	chr9:140512513-140512563	HepG2	liver:	n/a
31	chr9:140514393-140514443	GM12891	blood:	n/a
32	chr9:140513113-140513163	Jurkat	blood:	n/a
33	chr9:140515874-140515924	MCF10A-Er-Src	breast:	n/a
34	chr9:140512455-140512505	HCT-116	colon:	n/a
35	chr9:140512513-140512563	AG10803	skin:	n/a
36	chr9:140512815-140512865	HEK293	kidney:	embryo
37	chr9:140512455-140512505	SKMC	muscle:	n/a
38	chr9:140514016-140514066	HUVEC	blood vessel:	n/a
39	chr9:140512455-140512505	HMEC	breast:	n/a
40	chr9:140510480-140510530	AG04449	skin:	fetal
41	chr9:140513113-140513163	T-47D	breast:	n/a
42	chr9:140512513-140512563	NHDF-neo	bronchial:	n/a
43	chr9:140510480-140510530	NB4	blood:	n/a
44	chr9:140513215-140513265	HRE	kidney:	n/a
45	chr9:140512513-140512563	AG09309	skin:	n/a
46	chr9:140514393-140514443	MCF-7	breast:	n/a
47	chr9:140513113-140513163	ECC-1	luminal epithelium:	n/a
48	chr9:140515874-140515924	NHBE	bronchial:	n/a
49	chr9:140512815-140512865	RPTEC	kidney:	n/a
50	chr9:140515874-140515924	U87	brain:	n/a

(count:55 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:140481624..140488545-chr9:140511605..140516057,16	MCF-7	breast:
2	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
3	chr17:73775349..73776145-chr9:140506201..140506865,3	Hela-S3	cervix:
4	chr5:38556248..38557150-chr9:140513261..140513996,2	Hela-S3	cervix:
5	chr9:140445002..140446703-chr9:140512317..140515053,2	MCF-7	breast:
6	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
7	chr9:140469283..140475998-chr9:140510945..140517022,12	K562	blood:
8	chr14:96967956..96969589-chr9:140512244..140513858,2	MCF-7	breast:
9	chr15:80213455..80216232-chr9:140505941..140507985,2	MCF-7	breast:
10	chr9:140509926..140512200-chr9:140526442..140528104,2	MCF-7	breast:
11	chr12:72057222..72057844-chr9:140506717..140507309,2	Hela-S3	cervix:
12	chr11:61559954..61560588-chr9:140506302..140506842,2	Hela-S3	cervix:
13	chr17:8059167..8059999-chr9:140506144..140506746,2	Hela-S3	cervix:
14	chr17:80817947..80820292-chr9:140513382..140515787,2	MCF-7	breast:
15	chr9:140429112..140429930-chr9:140506255..140506842,2	MCF-7	breast:
16	chr16:30537615..30538179-chr9:140506214..140507038,2	Hela-S3	cervix:
17	chr9:140441799..140446269-chr9:140505086..140508400,5	MCF-7	breast:
18	chr9:140512988..140515143-chr9:140515432..140518984,3	K562	blood:
19	chr9:140511122..140512699-chr9:140559780..140561959,2	MCF-7	breast:
20	chr10:60027871..60028772-chr9:140513692..140514235,2	Hela-S3	cervix:
21	chr9:140502977..140505532-chr9:140542543..140544949,2	MCF-7	breast:
22	chr9:140513124..140515573-chr9:140519172..140522575,5	K562	blood:
23	chr9:139980430..139982105-chr9:140507982..140509636,2	MCF-7	breast:
24	chr9:140467532..140470216-chr9:140512251..140515096,2	MCF-7	breast:
25	chr9:140510301..140512347-chr9:140541289..140543188,2	MCF-7	breast:
26	chr14:102023934..102026552-chr9:140506731..140509354,2	MCF-7	breast:
27	chr9:140481402..140486615-chr9:140511490..140514947,5	K562	blood:
28	chr9:140513993..140515601-chr9:140519538..140521041,2	K562	blood:
29	chr9:140444528..140447263-chr9:140504669..140508200,5	MCF-7	breast:
30	chr9:140519645..140523590-chr9:140526467..140528234,3	K562	blood:
31	chr9:140444995..140447677-chr9:140508337..140511208,2	MCF-7	breast:
32	chr9:140511878..140514123-chr9:140514786..140517240,3	MCF-7	breast:
33	chr9:140513748..140516192-chr9:140572995..140575836,2	MCF-7	breast:
34	chr9:140504074..140505804-chr9:140564024..140565554,2	K562	blood:
35	chr9:140510590..140512160-chr9:140570027..140572607,2	MCF-7	breast:
36	chr9:140512926..140516965-chr9:140518236..140522251,5	MCF-7	breast:
37	chr9:140119502..140121788-chr9:140512732..140514255,2	MCF-7	breast:
38	chr17:1619677..1620447-chr9:140505862..140506714,2	Hela-S3	cervix:
39	chr11:66609649..66612516-chr9:140514616..140517037,2	MCF-7	breast:
40	chr9:140470864..140473169-chr9:140508209..140510262,2	K562	blood:
41	chr17:33914034..33914731-chr9:140506382..140507316,2	HCT-116	colon:
42	chr9:140519393..140522407-chr9:140523335..140527001,5	MCF-7	breast:
43	chr9:140172197..140174221-chr9:140511916..140514176,2	K562	blood:
44	chr9:140512840..140515056-chr9:140515180..140517797,2	K562	blood:
45	chr9:140510252..140513201-chr9:140591330..140593988,2	MCF-7	breast:
46	chr9:140426937..140428831-chr9:140509967..140512178,2	K562	blood:
47	chr14:36295481..36295998-chr9:140513118..140513972,2	Hela-S3	cervix:
48	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:
49	chr8:96085236..96087766-chr9:140513238..140514849,2	MCF-7	breast:
50	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:

No data

Variant related genes	Relation type
ARRDC1	TF binding region
EHMT1	TF binding region
C9orf37	TF binding region
ARRDC1	CpG island
EHMT1	CpG island
C9orf37	CpG island
ENSG00000090060	chromatin interactions
ENSG00000207601	chromatin interactions
ENSG00000130653	chromatin interactions
ENSG00000113594	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000259642	chromatin interactions
ENSG00000244968	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000169957	chromatin interactions
ENSG00000180953	chromatin interactions
ENSG00000165724	chromatin interactions
ENSG00000260806	chromatin interactions
ENSG00000134824	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000167716	chromatin interactions
ENSG00000133858	chromatin interactions
ENSG00000198113	chromatin interactions
ENSG00000245080	chromatin interactions
ENSG00000257028	chromatin interactions
ENSG00000177239	chromatin interactions
ENSG00000179094	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000006125	chromatin interactions
ENSG00000259332	chromatin interactions
ENSG00000258498	chromatin interactions
ENSG00000134825	chromatin interactions
ENSG00000168496	chromatin interactions
ENSG00000268996	chromatin interactions
ENSG00000148399	chromatin interactions
ENSG00000258938	chromatin interactions
ENSG00000182154	chromatin interactions
ENSG00000141556	chromatin interactions
ENSG00000100916	chromatin interactions
ENSG00000173653	chromatin interactions

Extended variants
information (count: 693 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:693 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2987618	chr9:140505476-140505477	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs566613136	chr9:140505511-140505512	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs184069274	chr9:140505557-140505558	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs548957203	chr9:140505570-140505571	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs373826484	chr9:140505580-140505581	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs111310145	chr9:140505637-140505638	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs534590981	chr9:140505638-140505639	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs13287726	chr9:140505661-140505662	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs537769210	chr9:140505668-140505669	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs554822518	chr9:140505673-140505674	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs571312827	chr9:140505675-140505676	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs140961556	chr9:140505729-140505730	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs540075045	chr9:140505765-140505766	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs559910799	chr9:140505782-140505783	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs35374891	chr9:140505790-140505791	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs546261182	chr9:140505793-140505794	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs562755686	chr9:140505839-140505840	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs531701775	chr9:140505852-140505853	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs188991961	chr9:140505870-140505871	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs373754666	chr9:140505882-140505883	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs79718443	chr9:140505883-140505884	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs67499662	chr9:140505895-140505896	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs118134777	chr9:140505912-140505913	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs559892390	chr9:140505925-140505926	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
25	rs538390686	chr9:140505926-140505927	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs572085119	chr9:140506015-140506016	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
27	rs139232235	chr9:140506035-140506036	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
28	rs552219037	chr9:140506038-140506039	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
29	rs34396298	chr9:140506039-140506040	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
30	rs76579999	chr9:140506041-140506042	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
31	rs187564419	chr9:140506047-140506048	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
32	rs9410111	chr9:140506058-140506059	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs541412894	chr9:140506065-140506066	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
34	rs183555213	chr9:140506099-140506100	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
35	rs533812949	chr9:140506103-140506104	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
36	rs553584959	chr9:140506110-140506111	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
37	rs200649276	chr9:140506115-140506116	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
38	rs112387098	chr9:140506118-140506119	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
39	rs576592549	chr9:140506119-140506120	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
40	rs372234190	chr9:140506128-140506129	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
41	rs187230559	chr9:140506189-140506190	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
42	rs143937610	chr9:140506196-140506197	Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
43	rs821313	chr9:140506209-140506210	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs543462802	chr9:140506220-140506221	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
45	rs542249205	chr9:140506221-140506222	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
46	rs144697017	chr9:140506223-140506224	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
47	rs191639847	chr9:140506230-140506231	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
48	rs112740094	chr9:140506235-140506236	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
49	rs548096957	chr9:140506240-140506241	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
50	rs370632084	chr9:140506247-140506248	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1466 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501400-140508400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:140501600-140505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:140501600-140505600	Weak transcription	A549	lung
4	chr9:140501600-140505800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:140501600-140506000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:140501600-140506000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:140501600-140506200	Weak transcription	Osteobl	bone
8	chr9:140501600-140506400	Weak transcription	HUVEC	blood vessel
9	chr9:140501600-140507800	Weak transcription	Aorta	Aorta
10	chr9:140501600-140508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:140501800-140506000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:140501800-140506000	Weak transcription	HSMMtube	muscle
13	chr9:140501800-140506200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:140501800-140509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:140502000-140506200	Weak transcription	NH-A	brain
18	chr9:140502000-140507800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:140502000-140508600	Weak transcription	Ovary	ovary
20	chr9:140502200-140505600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:140502200-140505600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:140502200-140505600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:140502200-140505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:140502200-140505800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr9:140502200-140505800	Weak transcription	Small Intestine	intestine
26	chr9:140502200-140506000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:140502200-140506000	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:140502200-140506000	Weak transcription	HSMM	muscle
29	chr9:140502200-140506200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:140502200-140506200	Weak transcription	GM12878-XiMat	blood
31	chr9:140502200-140506200	Weak transcription	NHDF-Ad	bronchial
32	chr9:140502200-140506200	Weak transcription	NHLF	lung
33	chr9:140502200-140506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:140502200-140507600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:140502200-140507600	Weak transcription	Brain Germinal Matrix	brain
36	chr9:140502200-140507800	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:140502200-140507800	Weak transcription	Dnd41	blood
38	chr9:140502200-140508000	Weak transcription	Brain Angular Gyrus	brain
39	chr9:140502200-140508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:140502400-140505600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:140502400-140505800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:140502400-140506000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:140502400-140506000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:140502400-140506000	Weak transcription	Brain Substantia Nigra	brain
45	chr9:140502400-140506000	Weak transcription	Psoas Muscle	Psoas
46	chr9:140502400-140506000	Weak transcription	Right Atrium	heart
47	chr9:140502400-140506000	Weak transcription	K562	blood
48	chr9:140502400-140506200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:140502400-140507200	Weak transcription	Fetal Brain Female	brain
50	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain

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