Variant report

Variant	nsv894672
Chromosome Location	chr9:140506209-140518576
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1518)
CpG islands
(count:550)
Chromatin interactive
region (count:49)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1518 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:140512995-140513194	K562	blood:	n/a	n/a
2	ARID3A	chr9:140514701-140514718	K562	blood:	n/a	n/a
3	ATF1	chr9:140512908-140513272	K562	blood:	n/a	n/a
4	ATF2	chr9:140512846-140513342	H1-hESC	embryonic stem cell:	n/a	n/a
5	ATF2	chr9:140512882-140513291	GM12878	blood:	n/a	n/a
6	ATF2	chr9:140512599-140513361	GM12878	blood:	n/a	n/a
7	ATF2	chr9:140513019-140513356	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF3	chr9:140512666-140513485	A549	lung:	n/a	chr9:140513400-140513409
9	ATF3	chr9:140513171-140513459	H1-hESC	embryonic stem cell:	n/a	chr9:140513400-140513409
10	ATF3	chr9:140513263-140513470	GM12878	blood:	n/a	chr9:140513400-140513409
11	ATF3	chr9:140512941-140513477	K562	blood:	n/a	chr9:140513400-140513409
12	ATF3	chr9:140513089-140513438	A549	lung:	n/a	chr9:140513400-140513409
13	ATF3	chr9:140506272-140506563	K562	blood:	n/a	n/a
14	ATF3	chr9:140513192-140513485	HepG2	liver:	n/a	chr9:140513400-140513409
15	ATF3	chr9:140513079-140513492	K562	blood:	n/a	chr9:140513400-140513409
16	ATF3	chr9:140506242-140506580	K562	blood:	n/a	n/a
17	BACH1	chr9:140512354-140512455	K562	blood:	n/a	n/a
18	BACH1	chr9:140506296-140506570	H1-hESC	embryonic stem cell:	n/a	n/a
19	BCL3	chr9:140505934-140508793	A549	lung:	n/a	n/a
20	BCL3	chr9:140512082-140513429	A549	lung:	n/a	n/a
21	BCL3	chr9:140512554-140513408	A549	lung:	n/a	n/a
22	BCL3	chr9:140512432-140513462	GM12878	blood:	n/a	n/a
23	BCL3	chr9:140506032-140508286	A549	lung:	n/a	n/a
24	BCLAF1	chr9:140512590-140513424	GM12878	blood:	n/a	n/a
25	BHLHE40	chr9:140506261-140506575	A549	lung:	n/a	n/a
26	BHLHE40	chr9:140506344-140506505	GM12878	blood:	n/a	n/a
27	BHLHE40	chr9:140512971-140513406	K562	blood:	n/a	n/a
28	BHLHE40	chr9:140512827-140513435	GM12878	blood:	n/a	n/a
29	BHLHE40	chr9:140513901-140514002	GM12878	blood:	n/a	n/a
30	BHLHE40	chr9:140506215-140506621	HepG2	liver:	n/a	n/a
31	BHLHE40	chr9:140513027-140513435	HepG2	liver:	n/a	n/a
32	BHLHE40	chr9:140506203-140506789	K562	blood:	n/a	n/a
33	BRCA1	chr9:140513152-140513282	HepG2	liver:	n/a	n/a
34	BRCA1	chr9:140513844-140513980	HepG2	liver:	n/a	n/a
35	BRCA1	chr9:140512934-140513450	Hela-S3	cervix:	n/a	n/a
36	BRCA1	chr9:140512436-140512563	Hela-S3	cervix:	n/a	n/a
37	BRCA1	chr9:140513086-140513352	GM12878	blood:	n/a	n/a
38	BRCA1	chr9:140506306-140506994	Hela-S3	cervix:	n/a	n/a
39	BRCA1	chr9:140513909-140514238	Hela-S3	cervix:	n/a	n/a
40	CBX3	chr9:140512733-140513293	K562	blood:	n/a	n/a
41	CCNT2	chr9:140506201-140506432	K562	blood:	n/a	n/a
42	CCNT2	chr9:140506758-140506912	K562	blood:	n/a	n/a
43	CCNT2	chr9:140513735-140513845	K562	blood:	n/a	n/a
44	CCNT2	chr9:140508742-140508951	K562	blood:	n/a	n/a
45	CCNT2	chr9:140512723-140513535	K562	blood:	n/a	n/a
46	CCNT2	chr9:140509152-140509313	K562	blood:	n/a	n/a
47	CEBPB	chr9:140512587-140512863	H1-hESC	embryonic stem cell:	n/a	n/a
48	CEBPB	chr9:140512826-140513387	ECC-1	luminal epithelium:	n/a	n/a
49	CEBPB	chr9:140512805-140513316	GM12878	blood:	n/a	n/a
50	CEBPB	chr9:140512554-140513344	MCF-7	breast:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140512815-140512865	GM12878	blood:	n/a
2	chr9:140512815-140512865	GM12878	blood:	n/a
3	chr9:140513215-140513265	AoSMC	blood vessel:	n/a
4	chr9:140514016-140514066	HCT-116	colon:	n/a
5	chr9:140512455-140512505	NHBE	bronchial:	n/a
6	chr9:140513113-140513163	NH-A	brain:	n/a
7	chr9:140513215-140513265	SAEC	small airway:	n/a
8	chr9:140515874-140515924	T-47D	breast:	n/a
9	chr9:140513215-140513265	U87	brain:	n/a
10	chr9:140515874-140515924	AG09319	gingival:	n/a
11	chr9:140512513-140512563	AG04449	skin:	fetal
12	chr9:140514016-140514066	NB4	blood:	n/a
13	chr9:140513215-140513265	NH-A	brain:	n/a
14	chr9:140514393-140514443	GM12878	blood:	n/a
15	chr9:140513215-140513265	HAEpiC	amniotic membrane:	n/a
16	chr9:140512815-140512865	HL-60	blood:	n/a
17	chr9:140512815-140512865	BJ	skin:	n/a
18	chr9:140514393-140514443	A549	lung:	n/a
19	chr9:140512513-140512563	MCF10A-Er-Src	breast:	n/a
20	chr9:140510480-140510530	GM12892	blood:	n/a
21	chr9:140514016-140514066	LNCaP	prostate:	n/a
22	chr9:140510480-140510530	CMK	blood:	n/a
23	chr9:140512513-140512563	U87	brain:	n/a
24	chr9:140512513-140512563	HCT-116	colon:	n/a
25	chr9:140512815-140512865	HEK293	kidney:	embryo
26	chr9:140514016-140514066	AG09309	skin:	n/a
27	chr9:140513113-140513163	HCF	heart:	n/a
28	chr9:140514016-140514066	Jurkat	blood:	n/a
29	chr9:140514016-140514066	HEK293	kidney:	embryo
30	chr9:140515874-140515924	PFSK-1	brain:	n/a
31	chr9:140513215-140513265	NT2-D1	testis:	n/a
32	chr9:140513113-140513163	MCF10A-Er-Src	breast:	n/a
33	chr9:140512455-140512505	HNPCEpiC	eye:	n/a
34	chr9:140510480-140510530	AG09319	gingival:	n/a
35	chr9:140513113-140513163	HPAEpiC	pulmonary alveolar:	n/a
36	chr9:140515874-140515924	MCF10A-Er-Src	breast:	n/a
37	chr9:140513113-140513163	H1-hESC	embryonic stem cell:	embryo
38	chr9:140514016-140514066	HAEpiC	amniotic membrane:	n/a
39	chr9:140510480-140510530	K562	blood:	n/a
40	chr9:140512513-140512563	HCM	heart:	n/a
41	chr9:140513113-140513163	ECC-1	luminal epithelium:	n/a
42	chr9:140513113-140513163	Hepatocyte	liver:	n/a
43	chr9:140514393-140514443	GM19239	blood:	n/a
44	chr9:140513215-140513265	HCT-116	colon:	n/a
45	chr9:140513215-140513265	LNCaP	prostate:	n/a
46	chr9:140512815-140512865	HCT-116	colon:	n/a
47	chr9:140515874-140515924	HRPEpiC	eye:	n/a
48	chr9:140513113-140513163	U87	brain:	n/a
49	chr9:140513215-140513265	PANC-1	pancreas:	n/a
50	chr9:140512513-140512563	HEEpiC	esophagus:	n/a

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:33914034..33914731-chr9:140506382..140507316,2	HCT-116	colon:
2	chr8:96085236..96087766-chr9:140513238..140514849,2	MCF-7	breast:
3	chr9:140482399..140489274-chr9:140503366..140510626,23	MCF-7	breast:
4	chr14:36295481..36295998-chr9:140513118..140513972,2	Hela-S3	cervix:
5	chr11:61559954..61560588-chr9:140506302..140506842,2	Hela-S3	cervix:
6	chr9:140429112..140429930-chr9:140506255..140506842,2	MCF-7	breast:
7	chr9:140473011..140477060-chr9:140511720..140517022,6	K562	blood:
8	chr5:38556248..38557150-chr9:140513261..140513996,2	Hela-S3	cervix:
9	chr9:140172197..140174221-chr9:140511916..140514176,2	K562	blood:
10	chr9:140481624..140488545-chr9:140511605..140516057,16	MCF-7	breast:
11	chr12:72057222..72057844-chr9:140506717..140507309,2	Hela-S3	cervix:
12	chr9:140510301..140512347-chr9:140541289..140543188,2	MCF-7	breast:
13	chr9:140509926..140512200-chr9:140526442..140528104,2	MCF-7	breast:
14	chr9:140426937..140428831-chr9:140509967..140512178,2	K562	blood:
15	chr15:80213455..80216232-chr9:140505941..140507985,2	MCF-7	breast:
16	chr9:140470864..140473169-chr9:140508209..140510262,2	K562	blood:
17	chr14:96967956..96969589-chr9:140512244..140513858,2	MCF-7	breast:
18	chr9:140119502..140121788-chr9:140512732..140514255,2	MCF-7	breast:
19	chr9:140481390..140486340-chr9:140509681..140515296,7	K562	blood:
20	chr17:73775349..73776145-chr9:140506201..140506865,3	Hela-S3	cervix:
21	chr17:1619677..1620447-chr9:140505862..140506714,2	Hela-S3	cervix:
22	chr9:140510252..140513201-chr9:140591330..140593988,2	MCF-7	breast:
23	chr9:140441799..140446269-chr9:140505086..140508400,5	MCF-7	breast:
24	chr9:140512840..140515056-chr9:140515180..140517797,2	K562	blood:
25	chr9:140513993..140515601-chr9:140519538..140521041,2	K562	blood:
26	chr9:140510590..140512160-chr9:140570027..140572607,2	MCF-7	breast:
27	chr17:8059167..8059999-chr9:140506144..140506746,2	Hela-S3	cervix:
28	chr9:140481402..140486615-chr9:140511490..140514947,5	K562	blood:
29	chr9:140444528..140447263-chr9:140504669..140508200,5	MCF-7	breast:
30	chr9:140444995..140447677-chr9:140508337..140511208,2	MCF-7	breast:
31	chr9:140117969..140119690-chr9:140505138..140507974,2	MCF-7	breast:
32	chr9:140469278..140479132-chr9:140503165..140510984,27	MCF-7	breast:
33	chr9:140469283..140475998-chr9:140510945..140517022,12	K562	blood:
34	chr9:140515440..140517099-chr9:140525922..140527990,2	K562	blood:
35	chr17:80817947..80820292-chr9:140513382..140515787,2	MCF-7	breast:
36	chr14:102023934..102026552-chr9:140506731..140509354,2	MCF-7	breast:
37	chr9:140470852..140475352-chr9:140511735..140515041,9	MCF-7	breast:
38	chr16:30537615..30538179-chr9:140506214..140507038,2	Hela-S3	cervix:
39	chr9:140511122..140512699-chr9:140559780..140561959,2	MCF-7	breast:
40	chr9:140512926..140516965-chr9:140518236..140522251,5	MCF-7	breast:
41	chr9:140513748..140516192-chr9:140572995..140575836,2	MCF-7	breast:
42	chr10:60027871..60028772-chr9:140513692..140514235,2	Hela-S3	cervix:
43	chr9:140512988..140515143-chr9:140515432..140518984,3	K562	blood:
44	chr9:140445002..140446703-chr9:140512317..140515053,2	MCF-7	breast:
45	chr11:66609649..66612516-chr9:140514616..140517037,2	MCF-7	breast:
46	chr9:140482066..140484246-chr9:140508462..140511181,2	K562	blood:
47	chr9:140511878..140514123-chr9:140514786..140517240,3	MCF-7	breast:
48	chr9:140467532..140470216-chr9:140512251..140515096,2	MCF-7	breast:
49	chr9:139980430..139982105-chr9:140507982..140509636,2	MCF-7	breast:

No data

Variant related genes	Relation type
ARRDC1	TF binding region
EHMT1	TF binding region
C9orf37	TF binding region
ARRDC1	CpG island
EHMT1	CpG island
C9orf37	CpG island
ENSG00000113594	chromatin interactions
ENSG00000198113	chromatin interactions
ENSG00000100916	chromatin interactions
ENSG00000133858	chromatin interactions
ENSG00000179094	chromatin interactions
ENSG00000090060	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000244968	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000168496	chromatin interactions
ENSG00000197191	chromatin interactions
ENSG00000258498	chromatin interactions
ENSG00000177239	chromatin interactions
ENSG00000148399	chromatin interactions
ENSG00000006125	chromatin interactions
ENSG00000257028	chromatin interactions
ENSG00000167716	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000134824	chromatin interactions
ENSG00000258938	chromatin interactions
ENSG00000130653	chromatin interactions
ENSG00000165724	chromatin interactions
ENSG00000245080	chromatin interactions
ENSG00000180953	chromatin interactions
ENSG00000259642	chromatin interactions
ENSG00000207601	chromatin interactions
ENSG00000173653	chromatin interactions
ENSG00000182154	chromatin interactions
ENSG00000260806	chromatin interactions
ENSG00000259332	chromatin interactions
ENSG00000134825	chromatin interactions
ENSG00000141556	chromatin interactions
ENSG00000268996	chromatin interactions
ENSG00000169957	chromatin interactions

Extended variants
information (count: 609 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:609 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs821313	chr9:140506209-140506210	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs543462802	chr9:140506220-140506221	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
3	rs542249205	chr9:140506221-140506222	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
4	rs144697017	chr9:140506223-140506224	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
5	rs191639847	chr9:140506230-140506231	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
6	rs112740094	chr9:140506235-140506236	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
7	rs548096957	chr9:140506240-140506241	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
8	rs370632084	chr9:140506247-140506248	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
9	rs113364011	chr9:140506286-140506287	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
10	rs183779894	chr9:140506290-140506291	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
11	rs114481371	chr9:140506334-140506335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
12	rs112073248	chr9:140506353-140506354	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
13	rs533544808	chr9:140506395-140506396	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
14	rs186964108	chr9:140506424-140506425	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
15	rs138564940	chr9:140506431-140506432	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
16	rs140280265	chr9:140506559-140506560	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
17	rs547808705	chr9:140506595-140506596	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
18	rs821312	chr9:140506615-140506616	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs533848927	chr9:140506619-140506620	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
20	rs191379498	chr9:140506657-140506658	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
21	rs549037306	chr9:140506709-140506710	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
22	rs115922725	chr9:140506751-140506752	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
23	rs565963778	chr9:140506752-140506753	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
24	rs528117129	chr9:140506767-140506768	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
25	rs185678151	chr9:140506781-140506782	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
26	rs555834568	chr9:140506783-140506784	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
27	rs143460575	chr9:140506838-140506839	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
28	rs551366508	chr9:140506854-140506855	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
29	rs541770361	chr9:140506856-140506857	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
30	rs564726034	chr9:140506885-140506886	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
31	rs571110362	chr9:140506896-140506897	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
32	rs116217517	chr9:140506926-140506927	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
33	rs371785718	chr9:140506944-140506945	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
34	rs77815262	chr9:140506968-140506969	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
35	rs550662656	chr9:140506980-140506981	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
36	rs529070646	chr9:140506990-140506991	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
37	rs531467598	chr9:140507054-140507055	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
38	rs547844806	chr9:140507055-140507056	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
39	rs567739229	chr9:140507085-140507086	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
40	rs570295840	chr9:140507086-140507087	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
41	rs117926800	chr9:140507121-140507122	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
42	rs147978858	chr9:140507147-140507148	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
43	rs570764112	chr9:140507175-140507176	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
44	rs112867222	chr9:140507178-140507179	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
45	rs111801937	chr9:140507183-140507184	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
46	rs142013971	chr9:140507201-140507202	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
47	rs569737664	chr9:140507229-140507230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
48	rs535970588	chr9:140507252-140507253	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
49	rs555871488	chr9:140507267-140507268	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
50	rs572476473	chr9:140507303-140507304	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1327 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140501400-140508400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:140501600-140506400	Weak transcription	HUVEC	blood vessel
3	chr9:140501600-140507800	Weak transcription	Aorta	Aorta
4	chr9:140501600-140508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:140501800-140509400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:140501800-140510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:140501800-140512200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:140502000-140507800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:140502000-140508600	Weak transcription	Ovary	ovary
10	chr9:140502200-140506600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:140502200-140507600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:140502200-140507600	Weak transcription	Brain Germinal Matrix	brain
13	chr9:140502200-140507800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:140502200-140507800	Weak transcription	Dnd41	blood
15	chr9:140502200-140508000	Weak transcription	Brain Angular Gyrus	brain
16	chr9:140502200-140508400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:140502400-140507200	Weak transcription	Fetal Brain Female	brain
18	chr9:140502400-140512000	Weak transcription	Fetal Brain Male	brain
19	chr9:140503000-140507600	Weak transcription	Primary T cells from cord blood	blood
20	chr9:140503200-140508200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:140503400-140507800	Weak transcription	Fetal Thymus	thymus
22	chr9:140503600-140506400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:140503600-140507600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:140503600-140507800	Weak transcription	Primary B cells from cord blood	blood
25	chr9:140503600-140507800	Weak transcription	Brain Anterior Caudate	brain
26	chr9:140503600-140507800	Weak transcription	Thymus	Thymus
27	chr9:140503600-140508000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:140504200-140507000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:140504200-140508000	Enhancers	Placenta	Placenta
30	chr9:140504400-140507400	Weak transcription	Fetal Stomach	stomach
31	chr9:140505200-140506400	Enhancers	Fetal Intestine Large	intestine
32	chr9:140505200-140508000	Enhancers	Lung	lung
33	chr9:140505400-140506800	Enhancers	Stomach Smooth Muscle	stomach
34	chr9:140505400-140507200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:140505400-140507200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:140505400-140507200	Enhancers	Fetal Muscle Leg	muscle
37	chr9:140505400-140507200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr9:140505400-140507400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr9:140505400-140507600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr9:140505400-140507800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:140505400-140508000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:140505400-140508000	Flanking Active TSS	Hela-S3	cervix
43	chr9:140505400-140509800	Genic enhancers	Gastric	stomach
44	chr9:140505600-140506400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr9:140505600-140506600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:140505600-140506800	Enhancers	Brain Cingulate Gyrus	brain
47	chr9:140505600-140507000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:140505600-140507000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:140505600-140507000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr9:140505600-140507200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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