Variant report

Variant	nsv895501
Chromosome Location	chr10:57736009-57928768
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:57824291..57825869-chr10:57827938..57830838,2	MCF-7	breast:
2	chr10:57810927..57812454-chr10:57820002..57821661,2	K562	blood:
3	chr10:57757077..57758579-chr10:57764722..57766777,2	MCF-7	breast:
4	chr10:57746592..57749487-chr10:57834078..57836757,2	K562	blood:
5	chr10:57748719..57749535-chr10:57876195..57877022,4	MCF-7	breast:
6	chr10:57746592..57749487-chr10:57834078..57836757,2	K562	blood:
7	chr10:57909018..57911218-chr10:57914611..57917570,2	K562	blood:
8	chr10:57859224..57862107-chr10:57868320..57870697,2	K562	blood:
9	chr10:57748719..57749535-chr10:57876195..57877022,4	MCF-7	breast:
10	chr10:57909018..57911218-chr10:57914611..57917570,2	K562	blood:
11	chr10:57927604..57930485-chr10:57936536..57938322,2	K562	blood:
12	chr10:57747558..57749260-chr10:57921516..57923175,2	MCF-7	breast:
13	chr10:57755531..57757629-chr14:20811264..20812832,2	MCF-7	breast:
14	chr10:57810927..57812454-chr10:57820002..57821661,2	K562	blood:
15	chr10:57859224..57862107-chr10:57868320..57870697,2	K562	blood:
16	chr10:57757077..57758579-chr10:57764722..57766777,2	MCF-7	breast:
17	chr10:57747558..57749260-chr10:57921516..57923175,2	MCF-7	breast:
18	chr10:57824291..57825869-chr10:57827938..57830838,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-1	chr10:57914592-57914605	FPKM1_group_3344_transcript_1
2	lnc-ZWINT-1	chr10:57914592-57914731	NONHSAT013466
3	lnc-ZWINT-1	chr10:57911541-57911756	FPKM1_group_3344_transcript_1
4	lnc-ZWINT-1	chr10:57911541-57911756	NONHSAT013466
5	lnc-MTRNR2L5-6	chr10:57742028-57742255	l_316_chr10:57728954-57743287_hela
6	lnc-ZWINT-1	chr10:57911542-57911756	XLOC_008828
7	lnc-MTRNR2L5-6	chr10:57742833-57743287	l_316_chr10:57728954-57743287_hela
8	lnc-ZWINT-1	chr10:57914593-57914731	XLOC_008828

No data

Variant related genes	Relation type
ENSG00000129484	chromatin interactions
ENSG00000259001	chromatin interactions
TAF5L	miRNA target sites

Extended variants
information (count: 1922 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:1922 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542316921	chr10:57736404-57736405	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs553455737	chr10:57736424-57736425	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561192622	chr10:57736432-57736433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs12258004	chr10:57736455-57736456	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs545051831	chr10:57736501-57736502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75867353	chr10:57736507-57736508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs78010714	chr10:57736508-57736509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs548046974	chr10:57736527-57736528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs545585453	chr10:57736554-57736555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs528097191	chr10:57736606-57736607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs567825496	chr10:57736613-57736614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs551619688	chr10:57736654-57736655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs190838814	chr10:57736679-57736680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs76561719	chr10:57736681-57736682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs138461056	chr10:57736690-57736691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs188219516	chr10:57736704-57736705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs192229966	chr10:57736743-57736744	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565862796	chr10:57736768-57736769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs6481187	chr10:57736788-57736789	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs550795162	chr10:57736791-57736792	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184257638	chr10:57736827-57736828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs146566464	chr10:57736836-57736837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs112487238	chr10:57736871-57736872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs201265918	chr10:57736872-57736873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs199614158	chr10:57736873-57736874	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs79382754	chr10:57736910-57736911	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs372906621	chr10:57736911-57736912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs34109175	chr10:57737002-57737003	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs187272427	chr10:57737027-57737028	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs546798199	chr10:57737043-57737044	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs192563597	chr10:57737067-57737068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs139181833	chr10:57737068-57737069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs573010595	chr10:57737119-57737120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs7917424	chr10:57737167-57737168	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs564923723	chr10:57737244-57737245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558935436	chr10:57737261-57737262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530534317	chr10:57737267-57737268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs74136755	chr10:57737301-57737302	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs7898016	chr10:57737343-57737344	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs529441620	chr10:57737356-57737357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7914277	chr10:57737360-57737361	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs559408686	chr10:57737374-57737375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554701223	chr10:57737498-57737499	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs574694970	chr10:57737516-57737517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs113897284	chr10:57737527-57737528	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs371862827	chr10:57737600-57737601	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs571509634	chr10:57737615-57737616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569508378	chr10:57737640-57737641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111431888	chr10:57737659-57737660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550571841	chr10:57737660-57737661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Chronic lymphocytic leukemia	21546498	CNVD

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57736400-57737200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr10:57737000-57737200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:57737200-57738400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:57737200-57738600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:57737400-57737600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:57737600-57738200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:57737800-57739000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:57738200-57738800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:57738200-57740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:57738400-57739000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr10:57738400-57739200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:57738400-57739200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:57738400-57739600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:57738400-57740000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:57738600-57738800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:57738600-57739600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:57738800-57739200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:57738800-57739400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:57738800-57739600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr10:57739000-57739600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr10:57739000-57739600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr10:57739000-57739600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:57739000-57739600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr10:57739200-57739400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:57739200-57739600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr10:57739200-57739600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr10:57739400-57739600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:57739600-57739800	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr10:57739600-57739800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:57739600-57739800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:57739600-57740000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:57739600-57740000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:57739600-57742400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:57748000-57749000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:57768000-57768200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:57768200-57768600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:57771800-57772800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:57772000-57772400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:57788000-57788600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr10:57788200-57788600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr10:57810600-57811000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:57826600-57850600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:57843600-57844800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr10:57843600-57844800	Enhancers	Ovary	ovary
45	chr10:57844800-57846000	Weak transcription	Ovary	ovary
46	chr10:57846000-57846200	Enhancers	Ovary	ovary
47	chr10:57850600-57851400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:57850800-57851400	Enhancers	Liver	Liver
49	chr10:57851400-57855000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:57853400-57854000	Enhancers	HepG2	liver

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