Variant report

Variant	nsv895566
Chromosome Location	chr10:61350192-61379398
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61363138..61365267-chr10:61366701..61368651,2	K562	blood:
2	chr10:61363138..61365267-chr10:61366701..61368651,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHYHIPL-3	chr10:61370889-61371006	ENSG00000235140
2	lnc-PHYHIPL-3	chr10:61356083-61356179	ENSG00000235140
3	lnc-PHYHIPL-3	chr10:61354710-61354809	ENSG00000235140

Extended variants
information (count: 1118 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1118 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7087413	chr10:61350192-61350193	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs75747417	chr10:61350208-61350209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532631812	chr10:61350237-61350238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76886835	chr10:61350238-61350239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565911689	chr10:61350304-61350305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536387537	chr10:61350383-61350384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548673863	chr10:61350405-61350406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528860582	chr10:61350408-61350409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs184337299	chr10:61350431-61350432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558960427	chr10:61350434-61350435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141123509	chr10:61350469-61350470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188642666	chr10:61350523-61350524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs114925341	chr10:61350534-61350535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs554058245	chr10:61350554-61350555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs180997413	chr10:61350556-61350557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149839781	chr10:61350607-61350608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs113209577	chr10:61350610-61350611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559173919	chr10:61350611-61350612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576024911	chr10:61350645-61350646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1909632	chr10:61350665-61350666	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs564522383	chr10:61350687-61350688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs199746701	chr10:61350710-61350711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs78161191	chr10:61350712-61350713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs56255043	chr10:61350717-61350718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs140647687	chr10:61350780-61350781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs551660004	chr10:61350901-61350902	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145717437	chr10:61350909-61350910	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559578244	chr10:61350936-61350937	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78223517	chr10:61350939-61350940	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs548466634	chr10:61350958-61350959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570151799	chr10:61350987-61350988	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs376825761	chr10:61351062-61351063	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530894931	chr10:61351089-61351090	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186001733	chr10:61351099-61351100	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570858922	chr10:61351116-61351117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371009585	chr10:61351117-61351118	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554115458	chr10:61351140-61351141	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs565787820	chr10:61351180-61351181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs1909631	chr10:61351196-61351197	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs192010708	chr10:61351251-61351252	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549705136	chr10:61351369-61351370	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs182224624	chr10:61351390-61351391	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543091398	chr10:61351404-61351405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567620745	chr10:61351423-61351424	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558176933	chr10:61351442-61351443	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576441037	chr10:61351446-61351447	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540577323	chr10:61351456-61351457	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116618515	chr10:61351503-61351504	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1909630	chr10:61351504-61351505	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs116401779	chr10:61351538-61351539	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Urothelial carcinoma	21177765	CNVD
abnormal development	18461090	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	20643615	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:61348400-61351200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61350800-61351800	Enhancers	Pancreas	Pancrea
4	chr10:61351200-61351800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:61351800-61352600	Weak transcription	Pancreas	Pancrea
6	chr10:61351800-61352800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:61352600-61352800	Enhancers	Pancreas	Pancrea
8	chr10:61352800-61354400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:61353400-61353600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:61353400-61353800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:61353800-61354800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:61354800-61355000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:61355000-61356000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:61355000-61356000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:61355000-61356000	Enhancers	Colon Smooth Muscle	Colon
16	chr10:61355200-61356000	Enhancers	Hela-S3	cervix
17	chr10:61355200-61356400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:61355400-61355600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:61355400-61355800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:61355600-61366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:61361000-61362000	Enhancers	Placenta	Placenta
22	chr10:61362000-61368600	Weak transcription	Placenta	Placenta
23	chr10:61365000-61365200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr10:61366000-61366600	Enhancers	Fetal Brain Male	brain
25	chr10:61366000-61367000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:61366000-61367000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:61366000-61367400	Enhancers	Brain Germinal Matrix	brain
28	chr10:61366200-61366600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:61366200-61366600	Enhancers	HSMMtube	muscle
30	chr10:61366200-61366600	Enhancers	NH-A	brain
31	chr10:61366200-61366800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:61366200-61366800	Enhancers	Fetal Heart	heart
33	chr10:61366200-61367000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:61366200-61367000	Enhancers	Hela-S3	cervix
35	chr10:61366200-61369000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:61366400-61366600	Enhancers	Fetal Intestine Small	intestine
37	chr10:61366400-61366800	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr10:61366400-61368400	Enhancers	Fetal Intestine Large	intestine
39	chr10:61366600-61367200	Weak transcription	Fetal Brain Male	brain
40	chr10:61366600-61367200	Weak transcription	Fetal Intestine Small	intestine
41	chr10:61366800-61367200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:61366800-61367800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:61367000-61368000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:61367000-61368400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:61367000-61368400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr10:61367000-61368400	Weak transcription	Hela-S3	cervix
47	chr10:61367200-61367400	Enhancers	Fetal Brain Male	brain
48	chr10:61367200-61368400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:61367200-61368400	Enhancers	Fetal Intestine Small	intestine
50	chr10:61367400-61368200	Enhancers	Duodenum Mucosa	Duodenum

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