Variant report
| Variant | rs1909632 |
|---|---|
| Chromosome Location | chr10:61350665-61350666 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10763612 | 0.84[EUR][1000 genomes] |
| rs10826316 | 0.96[ASN][1000 genomes] |
| rs10826318 | 0.96[ASN][1000 genomes] |
| rs10826319 | 0.96[ASN][1000 genomes] |
| rs11006582 | 0.96[ASN][1000 genomes] |
| rs11006583 | 0.94[ASN][1000 genomes] |
| rs11006584 | 0.96[ASN][1000 genomes] |
| rs11592742 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11813512 | 1.00[ASN][1000 genomes] |
| rs12243790 | 0.96[ASN][1000 genomes] |
| rs12254257 | 1.00[ASN][1000 genomes] |
| rs12412394 | 0.96[ASN][1000 genomes] |
| rs12415285 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12416685 | 1.00[ASN][1000 genomes] |
| rs16913790 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909646 | 0.94[ASN][1000 genomes] |
| rs2126773 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4301738 | 0.96[ASN][1000 genomes] |
| rs4512773 | 0.96[ASN][1000 genomes] |
| rs4536156 | 0.96[ASN][1000 genomes] |
| rs61860789 | 0.94[ASN][1000 genomes] |
| rs61860790 | 0.94[ASN][1000 genomes] |
| rs61860852 | 0.96[ASN][1000 genomes] |
| rs61860853 | 0.96[ASN][1000 genomes] |
| rs7071234 | 0.96[ASN][1000 genomes] |
| rs7087374 | 0.96[ASN][1000 genomes] |
| rs7087516 | 0.96[ASN][1000 genomes] |
| rs72808403 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72808409 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7919650 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61345600-61353400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 2 | chr10:61348400-61351200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
