Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10763612	0.80[AMR][1000 genomes]
rs10826316	0.92[ASN][1000 genomes]
rs10826318	0.92[ASN][1000 genomes]
rs10826319	0.92[ASN][1000 genomes]
rs11006582	0.92[ASN][1000 genomes]
rs11006583	0.91[ASN][1000 genomes]
rs11006584	0.92[ASN][1000 genomes]
rs11592742	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11813512	0.96[ASN][1000 genomes]
rs12243790	0.92[ASN][1000 genomes]
rs12254257	0.96[ASN][1000 genomes]
rs12412394	0.92[ASN][1000 genomes]
rs12416685	0.96[ASN][1000 genomes]
rs16913790	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1909632	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1909646	0.91[ASN][1000 genomes]
rs2126773	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4301738	0.92[ASN][1000 genomes]
rs4512773	0.92[ASN][1000 genomes]
rs4536156	0.92[ASN][1000 genomes]
rs61860789	0.91[ASN][1000 genomes]
rs61860790	0.91[ASN][1000 genomes]
rs61860852	0.92[ASN][1000 genomes]
rs61860853	0.92[ASN][1000 genomes]
rs7071234	0.92[ASN][1000 genomes]
rs7087374	0.92[ASN][1000 genomes]
rs7087516	0.92[ASN][1000 genomes]
rs72808403	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72808409	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919650	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61368400-61369800	Enhancers	Colon Smooth Muscle	Colon
2	chr10:61368800-61373000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:61369000-61373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:61369200-61370600	Weak transcription	Placenta	Placenta
5	chr10:61369400-61370000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61369600-61370000	Enhancers	Hela-S3	cervix

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