Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr10:61344723-61345419	SK-N-SH	brain:	n/a	n/a
2	EP300	chr10:61344798-61345332	SK-N-SH_RA	brain:	n/a	chr10:61345110-61345124
3	NFIC	chr10:61344618-61345602	SK-N-SH	brain:	n/a	n/a
4	EP300	chr10:61344649-61345606	SK-N-SH	brain:	n/a	chr10:61345110-61345124
5	FOS	chr10:61344877-61345451	MCF10A-Er-Src	breast:	n/a	n/a
6	GATA3	chr10:61344595-61345625	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr10:61344731-61345724	PFSK-1	brain:	n/a	n/a
8	NFIC	chr10:61344711-61345267	SK-N-SH	brain:	n/a	n/a
9	PBX3	chr10:61344744-61345456	SK-N-SH	brain:	n/a	n/a
10	MEF2A	chr10:61344703-61345346	SK-N-SH	brain:	n/a	n/a
11	TCF12	chr10:61344605-61345614	SK-N-SH	brain:	n/a	n/a
12	YY1	chr10:61344778-61345124	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr10:61344652-61345579	SK-N-SH	brain:	n/a	n/a
14	GATA3	chr10:61344626-61345537	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr10:61344844-61345142	MCF10A-Er-Src	breast:	n/a	n/a
16	RXRA	chr10:61344821-61345377	SK-N-SH	brain:	n/a	n/a
17	EP300	chr10:61344765-61345442	SK-N-SH_RA	brain:	n/a	chr10:61345110-61345124
18	POLR2A	chr10:61344725-61345450	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr10:61344508-61345375	PFSK-1	brain:	n/a	n/a
20	TEAD4	chr10:61344708-61345372	SK-N-SH	brain:	n/a	n/a
21	FOS	chr10:61344846-61345451	MCF10A-Er-Src	breast:	n/a	n/a
22	JUND	chr10:61344637-61345570	SK-N-SH	brain:	n/a	n/a
23	FOSL2	chr10:61344685-61345502	SK-N-SH	brain:	n/a	n/a
24	EP300	chr10:61344783-61345563	SK-N-SH	brain:	n/a	chr10:61345110-61345124

Variant related genes	Relation type
ENSG00000235140	TF binding region

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10763612	0.84[EUR][1000 genomes]
rs10826316	0.96[ASN][1000 genomes]
rs10826318	0.96[ASN][1000 genomes]
rs10826319	0.96[ASN][1000 genomes]
rs11006582	0.96[ASN][1000 genomes]
rs11006583	0.94[ASN][1000 genomes]
rs11006584	0.96[ASN][1000 genomes]
rs11813512	1.00[ASN][1000 genomes]
rs12243790	0.96[ASN][1000 genomes]
rs12254257	1.00[ASN][1000 genomes]
rs12412394	0.96[ASN][1000 genomes]
rs12415285	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12416685	1.00[ASN][1000 genomes]
rs16913790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909632	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909646	0.94[ASN][1000 genomes]
rs2126773	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4301738	0.96[ASN][1000 genomes]
rs4512773	0.96[ASN][1000 genomes]
rs4536156	0.96[ASN][1000 genomes]
rs61860789	0.94[ASN][1000 genomes]
rs61860790	0.94[ASN][1000 genomes]
rs61860852	0.96[ASN][1000 genomes]
rs61860853	0.96[ASN][1000 genomes]
rs7071234	0.96[ASN][1000 genomes]
rs7087374	0.96[ASN][1000 genomes]
rs7087516	0.96[ASN][1000 genomes]
rs72808403	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72808409	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919650	0.94[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61341000-61346000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61342600-61345800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:61342800-61345800	Weak transcription	Brain Anterior Caudate	brain
6	chr10:61343000-61345200	Weak transcription	Brain Angular Gyrus	brain
7	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:61344200-61345600	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:61344200-61345600	Enhancers	Brain Hippocampus Middle	brain
11	chr10:61344200-61345800	Enhancers	Brain Substantia Nigra	brain
12	chr10:61344400-61345600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:61344400-61345600	Enhancers	HSMM	muscle
14	chr10:61344400-61346400	Enhancers	HSMMtube	muscle
15	chr10:61344600-61345400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:61344600-61345400	Weak transcription	Hela-S3	cervix
17	chr10:61344800-61345600	Enhancers	HMEC	breast
18	chr10:61345000-61345400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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