Variant report

Variant	rs16913790
Chromosome Location	chr10:61346182-61346183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:61345780-61346670	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10763612	0.82[EUR][1000 genomes]
rs10826316	0.96[ASN][1000 genomes]
rs10826318	0.96[ASN][1000 genomes]
rs10826319	0.96[ASN][1000 genomes]
rs11006582	0.96[ASN][1000 genomes]
rs11006583	0.94[ASN][1000 genomes]
rs11006584	0.96[ASN][1000 genomes]
rs11592179	0.88[LWK][hapmap];1.00[MKK][hapmap]
rs11592742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813512	1.00[ASN][1000 genomes]
rs12243790	0.96[ASN][1000 genomes]
rs12254257	1.00[ASN][1000 genomes]
rs12412394	0.96[ASN][1000 genomes]
rs12415285	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12416685	1.00[ASN][1000 genomes]
rs1909632	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909646	0.94[ASN][1000 genomes]
rs2126773	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4301738	0.96[ASN][1000 genomes]
rs4512773	0.96[ASN][1000 genomes]
rs4536156	0.96[ASN][1000 genomes]
rs61860789	0.94[ASN][1000 genomes]
rs61860790	0.94[ASN][1000 genomes]
rs61860852	0.96[ASN][1000 genomes]
rs61860853	0.96[ASN][1000 genomes]
rs7071234	0.96[ASN][1000 genomes]
rs7087374	0.96[ASN][1000 genomes]
rs7087516	0.96[ASN][1000 genomes]
rs72808403	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72808409	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919650	0.94[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:61344400-61346400	Enhancers	HSMMtube	muscle
6	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
7	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:61345600-61346200	Weak transcription	Hela-S3	cervix
10	chr10:61345600-61346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:61345600-61346600	Weak transcription	HMEC	breast
12	chr10:61345600-61346800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:61345600-61346800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:61346000-61347000	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:61346000-61347400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:61346000-61347800	Enhancers	NHEK	skin

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