Variant report

Variant	nsv895912
Chromosome Location	chr10:98794615-98838694
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98832412..98832941-chr10:98956450..98957008,2	MCF-7	breast:
2	chr10:98797198..98797736-chr10:98827543..98828386,2	MCF-7	breast:
3	chr10:98805546..98807269-chr10:98807470..98810289,2	K562	blood:
4	chr10:98797086..98797680-chr21:40592225..40593135,2	MCF-7	breast:
5	chr10:98801158..98803670-chr10:98805230..98808659,3	K562	blood:
6	chr10:98805546..98807269-chr10:98807470..98810289,2	K562	blood:
7	chr10:98807926..98809507-chr10:98811467..98812991,2	K562	blood:
8	chr10:98832501..98833370-chr10:98969951..98970951,5	K562	blood:
9	chr10:98794544..98796679-chr10:98798007..98800801,2	MCF-7	breast:
10	chr10:98290286..98292341-chr10:98797201..98799165,2	K562	blood:
11	chr10:98824817..98826920-chr10:98829119..98831904,2	K562	blood:
12	chr10:98807926..98809507-chr10:98811467..98812991,2	K562	blood:
13	chr10:98832347..98833305-chr10:98969570..98970861,6	MCF-7	breast:
14	chr10:98832712..98833218-chr10:98993851..98994375,2	MCF-7	breast:
15	chr10:98797198..98797736-chr10:98827543..98828386,2	MCF-7	breast:
16	chr10:98798423..98800603-chr10:98804421..98806912,2	MCF-7	breast:
17	chr10:98801964..98805154-chr10:98805230..98807227,3	K562	blood:
18	chr10:98801158..98803670-chr10:98805230..98808659,3	K562	blood:
19	chr10:98791351..98794157-chr10:98800450..98802243,2	K562	blood:
20	chr10:98832312..98833311-chr10:98969943..98970883,4	MCF-7	breast:
21	chr10:98798423..98800603-chr10:98804421..98806912,2	MCF-7	breast:
22	chr10:98832792..98833549-chr10:98877399..98877991,2	K562	blood:
23	chr10:98833592..98834496-chr10:98970236..98971005,2	K562	blood:
24	chr10:98790200..98791769-chr10:98796647..98799278,2	K562	blood:
25	chr10:98832441..98833621-chr10:98876782..98877820,10	MCF-7	breast:
26	chr10:98824817..98826920-chr10:98829119..98831904,2	K562	blood:
27	chr10:98796702..98797781-chr10:98876858..98877776,6	MCF-7	breast:
28	chr10:98797214..98797746-chr10:98876875..98877694,2	K562	blood:
29	chr10:98797178..98797761-chr10:98970351..98971056,2	MCF-7	breast:
30	chr10:98794544..98796679-chr10:98798007..98800801,2	MCF-7	breast:
31	chr10:98801964..98805154-chr10:98805230..98807227,3	K562	blood:
32	chr10:98796818..98797761-chr10:98969942..98970829,2	K562	blood:
33	chr10:98795681..98797860-chr10:98798742..98801643,2	K562	blood:
34	chr10:98795681..98797860-chr10:98798742..98801643,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FRAT2-4	chr10:98825772-98825843	NONHSAT015846
2	lnc-FRAT2-4	chr10:98825270-98825416	NONHSAT015846

No data

Extended variants
information (count: 1801 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1801 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12268044	chr10:98794615-98794616	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs368476607	chr10:98794657-98794658	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs77119759	chr10:98794671-98794672	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs533905343	chr10:98794689-98794690	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs555714979	chr10:98794724-98794725	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs574165620	chr10:98794782-98794783	Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs535052970	chr10:98794812-98794813	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553204779	chr10:98794843-98794844	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs56855670	chr10:98794876-98794877	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs565869587	chr10:98794877-98794878	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs375991419	chr10:98794879-98794880	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs148875536	chr10:98794880-98794881	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs59119956	chr10:98794881-98794882	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs576726729	chr10:98794884-98794885	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs72094691	chr10:98794885-98794886	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs74674816	chr10:98794887-98794888	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs74153751	chr10:98794893-98794894	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs144290318	chr10:98794901-98794902	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs368295408	chr10:98794921-98794922	Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs180806595	chr10:98795024-98795025	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs573766873	chr10:98795028-98795029	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs561781319	chr10:98795034-98795035	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs529040659	chr10:98795058-98795059	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs541350576	chr10:98795059-98795060	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs186731832	chr10:98795099-98795100	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533389233	chr10:98795173-98795174	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs551824928	chr10:98795278-98795279	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534921620	chr10:98795294-98795295	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs111292437	chr10:98795363-98795364	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs549451973	chr10:98795385-98795386	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs191174335	chr10:98795416-98795417	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs554164076	chr10:98795427-98795428	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs200030787	chr10:98795434-98795435	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs367990867	chr10:98795441-98795442	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs567761331	chr10:98795462-98795463	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs57573427	chr10:98795467-98795468	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs5787213	chr10:98795488-98795489	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs545982671	chr10:98795602-98795603	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs553266197	chr10:98795634-98795635	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs571580803	chr10:98795664-98795665	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs369692809	chr10:98795691-98795692	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546291711	chr10:98795693-98795694	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574329575	chr10:98795703-98795704	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs77780633	chr10:98795746-98795747	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs151192993	chr10:98795771-98795772	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs183103197	chr10:98795777-98795778	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs555403586	chr10:98795808-98795809	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573770878	chr10:98795810-98795811	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs140442161	chr10:98795829-98795830	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs559564086	chr10:98795846-98795847	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Autosomal dominant partial epilepsy	18472482	CNVD
Breast cancer	16397240	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:719 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
2	chr10:98781200-98797000	Weak transcription	Gastric	stomach
3	chr10:98784200-98797000	Weak transcription	Pancreas	Pancrea
4	chr10:98784200-98797400	Weak transcription	Esophagus	oesophagus
5	chr10:98785600-98797200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98785800-98797000	Weak transcription	Brain Angular Gyrus	brain
7	chr10:98785800-98797000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:98785800-98797000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:98787400-98797400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:98788200-98797000	Weak transcription	Lung	lung
11	chr10:98790400-98794800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:98790600-98797000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:98790800-98797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:98791400-98797400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98791600-98795200	Weak transcription	Fetal Brain Female	brain
16	chr10:98792600-98797400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:98792800-98797400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:98792800-98797400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:98792800-98803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:98793000-98797400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:98793000-98797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:98793000-98797400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:98793000-98810600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:98793200-98797200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:98793200-98797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:98793200-98797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:98793400-98795600	Weak transcription	Brain Germinal Matrix	brain
28	chr10:98793600-98797400	Weak transcription	Fetal Brain Male	brain
29	chr10:98794000-98794800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:98794200-98795200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:98794400-98794800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:98794400-98795000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr10:98794600-98795400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:98794600-98797200	Weak transcription	Thymus	Thymus
35	chr10:98794800-98795000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr10:98794800-98795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:98794800-98797000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:98795000-98797000	Weak transcription	Spleen	Spleen
39	chr10:98795200-98795400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:98795200-98795800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:98795200-98795800	Strong transcription	Fetal Brain Female	brain
42	chr10:98795400-98797000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:98795400-98797400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:98795600-98797400	Strong transcription	Brain Germinal Matrix	brain
45	chr10:98795800-98797200	Weak transcription	Fetal Brain Female	brain
46	chr10:98795800-98797600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:98796800-98797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:98796800-98797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:98796800-98797000	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr10:98797000-98797200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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