Variant report

Variant	rs555714979
Chromosome Location	chr10:98794724-98794725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98794544..98796679-chr10:98798007..98800801,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98778000-98797200	Strong transcription	Fetal Thymus	thymus
2	chr10:98781200-98797000	Weak transcription	Gastric	stomach
3	chr10:98784200-98797000	Weak transcription	Pancreas	Pancrea
4	chr10:98784200-98797400	Weak transcription	Esophagus	oesophagus
5	chr10:98785600-98797200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98785800-98797000	Weak transcription	Brain Angular Gyrus	brain
7	chr10:98785800-98797000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:98785800-98797000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:98787400-98797400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:98788200-98797000	Weak transcription	Lung	lung
11	chr10:98790400-98794800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:98790600-98797000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:98790800-98797000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:98791400-98797400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98791600-98795200	Weak transcription	Fetal Brain Female	brain
16	chr10:98792600-98797400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:98792800-98797400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:98792800-98797400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:98792800-98803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:98793000-98797400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:98793000-98797400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:98793000-98797400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:98793000-98810600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:98793200-98797200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:98793200-98797200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:98793200-98797400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:98793400-98795600	Weak transcription	Brain Germinal Matrix	brain
28	chr10:98793600-98797400	Weak transcription	Fetal Brain Male	brain
29	chr10:98794000-98794800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:98794200-98795200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:98794400-98794800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:98794400-98795000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr10:98794600-98795400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:98794600-98797200	Weak transcription	Thymus	Thymus

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