Variant report

Variant	nsv904245
Chromosome Location	chr15:56229760-56324451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1366)
CpG islands
(count:794)
Chromatin interactive
region (count:70)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1366 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:56244680-56245174	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:56285729-56285953	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:56290869-56290907	K562	blood:	n/a	n/a
4	ARID3A	chr15:56267850-56267851	K562	blood:	n/a	n/a
5	ARID3A	chr15:56285218-56285455	K562	blood:	n/a	n/a
6	ARID3A	chr15:56247314-56247923	HepG2	liver:	n/a	n/a
7	ARID3A	chr15:56286628-56286918	K562	blood:	n/a	n/a
8	ATF1	chr15:56252017-56252189	K562	blood:	n/a	n/a
9	ATF1	chr15:56295967-56296197	K562	blood:	n/a	n/a
10	ATF1	chr15:56286965-56287213	K562	blood:	n/a	n/a
11	ATF1	chr15:56301135-56301199	K562	blood:	n/a	n/a
12	ATF1	chr15:56311295-56311472	K562	blood:	n/a	n/a
13	ATF3	chr15:56295943-56296234	K562	blood:	n/a	chr15:56296138-56296151
14	ATF3	chr15:56244819-56245017	HepG2	liver:	n/a	n/a
15	BACH1	chr15:56285350-56286282	H1-hESC	embryonic stem cell:	n/a	n/a
16	BHLHE40	chr15:56298674-56298896	HepG2	liver:	n/a	n/a
17	BHLHE40	chr15:56309879-56310348	K562	blood:	n/a	n/a
18	BHLHE40	chr15:56244759-56245075	HepG2	liver:	n/a	n/a
19	BHLHE40	chr15:56285172-56286542	K562	blood:	n/a	chr15:56285460-56285476
20	BHLHE40	chr15:56286927-56286969	K562	blood:	n/a	n/a
21	BHLHE40	chr15:56285538-56285951	GM12878	blood:	n/a	n/a
22	BHLHE40	chr15:56310014-56310402	HepG2	liver:	n/a	n/a
23	BHLHE40	chr15:56291015-56291031	K562	blood:	n/a	n/a
24	BRCA1	chr15:56290670-56291397	Hela-S3	cervix:	n/a	n/a
25	BRCA1	chr15:56320664-56320979	Hela-S3	cervix:	n/a	n/a
26	BRCA1	chr15:56285563-56285941	Hela-S3	cervix:	n/a	n/a
27	BRCA1	chr15:56285288-56285308	H1-hESC	embryonic stem cell:	n/a	n/a
28	BRCA1	chr15:56285293-56285463	GM12878	blood:	n/a	n/a
29	CBX3	chr15:56285682-56285992	K562	blood:	n/a	n/a
30	CBX3	chr15:56306949-56307149	K562	blood:	n/a	n/a
31	CBX3	chr15:56306952-56307210	K562	blood:	n/a	n/a
32	CCNT2	chr15:56285239-56286486	K562	blood:	n/a	n/a
33	CEBPB	chr15:56285127-56285219	K562	blood:	n/a	n/a
34	CEBPB	chr15:56295983-56296170	HepG2	liver:	n/a	chr15:56296117-56296128
35	CEBPB	chr15:56244671-56245117	HepG2	liver:	n/a	n/a
36	CEBPB	chr15:56247287-56247538	A549	lung:	n/a	n/a
37	CEBPB	chr15:56286800-56287127	HepG2	liver:	n/a	chr15:56286825-56286838
38	CEBPB	chr15:56252081-56252385	K562	blood:	n/a	n/a
39	CEBPB	chr15:56315434-56315641	Hela-S3	cervix:	n/a	chr15:56315481-56315492
40	CEBPB	chr15:56244680-56245125	HepG2	liver:	n/a	n/a
41	CEBPB	chr15:56295983-56296187	A549	lung:	n/a	chr15:56296117-56296128
42	CEBPB	chr15:56244701-56245112	HepG2	liver:	n/a	n/a
43	CEBPB	chr15:56290776-56291085	A549	lung:	n/a	chr15:56290913-56290926 chr15:56290913-56290924
44	CEBPB	chr15:56253954-56253984	A549	lung:	n/a	n/a
45	CEBPB	chr15:56298629-56298817	K562	blood:	n/a	chr15:56298720-56298731
46	CEBPB	chr15:56320671-56321057	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr15:56244775-56245019	HepG2	liver:	n/a	n/a
48	CEBPB	chr15:56297095-56297179	IMR90	lung:	n/a	n/a
49	CEBPB	chr15:56298655-56298882	Hela-S3	cervix:	n/a	chr15:56298720-56298731
50	CEBPB	chr15:56315403-56315553	HepG2	liver:	n/a	chr15:56315481-56315492

(count:794 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:56285484-56285534	PrEC	prostate:	n/a
2	chr15:56285484-56285534	PrEC	prostate:	n/a
3	chr15:56284168-56284218	AG10803	skin:	n/a
4	chr15:56286336-56286386	NH-A	brain:	n/a
5	chr15:56290261-56290311	HMEC	breast:	n/a
6	chr15:56284168-56284218	HUVEC	blood vessel:	n/a
7	chr15:56285761-56285811	HRE	kidney:	n/a
8	chr15:56286283-56286333	A549	lung:	n/a
9	chr15:56286150-56286200	ovcar-3	ovarian:	n/a
10	chr15:56285761-56285811	AoSMC	blood vessel:	n/a
11	chr15:56286575-56286625	AoSMC	blood vessel:	n/a
12	chr15:56286150-56286200	GM12891	blood:	n/a
13	chr15:56286575-56286625	NH-A	brain:	n/a
14	chr15:56286150-56286200	HEEpiC	esophagus:	n/a
15	chr15:56286067-56286117	HCPEpiC	choroid plexus:	n/a
16	chr15:56290261-56290311	HepG2	liver:	n/a
17	chr15:56285484-56285534	HCPEpiC	choroid plexus:	n/a
18	chr15:56299380-56299430	SK-N-MC	brain:	n/a
19	chr15:56290261-56290311	HCF	heart:	n/a
20	chr15:56285484-56285534	ECC-1	luminal epithelium:	n/a
21	chr15:56286067-56286117	A549	lung:	n/a
22	chr15:56299380-56299430	GM12892	blood:	n/a
23	chr15:56286575-56286625	LNCaP	prostate:	n/a
24	chr15:56299380-56299430	SAEC	small airway:	n/a
25	chr15:56285261-56285311	HNPCEpiC	eye:	n/a
26	chr15:56286283-56286333	K562	blood:	n/a
27	chr15:56286150-56286200	BE2_C	brain:	n/a
28	chr15:56286575-56286625	NB4	blood:	n/a
29	chr15:56290261-56290311	ECC-1	luminal epithelium:	n/a
30	chr15:56285484-56285534	HIPEpiC	eye:	n/a
31	chr15:56285741-56285791	GM12878	blood:	n/a
32	chr15:56286150-56286200	MCF10A-Er-Src	breast:	n/a
33	chr15:56285741-56285791	Hela-S3	cervix:	n/a
34	chr15:56285741-56285791	U87	brain:	n/a
35	chr15:56286575-56286625	AG04450	lung:	fetal
36	chr15:56285484-56285534	ovcar-3	ovarian:	n/a
37	chr15:56285741-56285791	HEK293	kidney:	embryo
38	chr15:56285261-56285311	AG04449	skin:	fetal
39	chr15:56286336-56286386	HRPEpiC	eye:	n/a
40	chr15:56286575-56286625	Jurkat	blood:	n/a
41	chr15:56285261-56285311	A549	lung:	n/a
42	chr15:56286283-56286333	BJ	skin:	n/a
43	chr15:56299380-56299430	NH-A	brain:	n/a
44	chr15:56282277-56282327	ovcar-3	ovarian:	n/a
45	chr15:56286067-56286117	HCF	heart:	n/a
46	chr15:56286336-56286386	GM12878	blood:	n/a
47	chr15:56285741-56285791	HCF	heart:	n/a
48	chr15:56285741-56285791	RPTEC	kidney:	n/a
49	chr15:56299380-56299430	SK-N-SH_RA	brain:	n/a
50	chr15:56285484-56285534	Jurkat	blood:	n/a

(count:70 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:56285803..56286769-chr7:144532503..144533132,2	HCT-116	colon:
2	chr15:56040535..56042266-chr15:56323409..56324983,2	K562	blood:
3	chr15:56276877..56278529-chr15:56290959..56293005,2	MCF-7	breast:
4	chr15:56309924..56310815-chr15:56344688..56345628,4	MCF-7	breast:
5	chr15:56250089..56252612-chr15:56259045..56261387,2	MCF-7	breast:
6	chr15:56304158..56307081-chr15:56310322..56313297,2	K562	blood:
7	chr15:56290100..56291758-chr15:56342391..56345191,2	MCF-7	breast:
8	chr15:56290352..56292488-chr15:56331467..56333363,2	MCF-7	breast:
9	chr15:56249277..56251562-chr15:56285197..56286697,2	MCF-7	breast:
10	chr15:56257143..56259328-chr15:56260984..56263123,2	K562	blood:
11	chr15:56289959..56291765-chr15:56293575..56295875,2	K562	blood:
12	chr15:56286939..56288503-chr15:56293657..56295210,2	K562	blood:
13	chr1:109234674..109235306-chr15:56285708..56286287,2	Hela-S3	cervix:
14	chr15:56275489..56279024-chr15:56279462..56282619,5	K562	blood:
15	chr1:145381291..145384278-chr15:56284107..56286728,2	MCF-7	breast:
16	chr15:56286939..56288503-chr15:56293657..56295210,2	K562	blood:
17	chr15:56271720..56275778-chr15:56283975..56286935,4	K562	blood:
18	chr15:56288413..56291274-chr15:56330655..56333525,2	MCF-7	breast:
19	chr15:56284455..56287261-chr15:56299264..56302045,2	MCF-7	breast:
20	chr15:56285343..56287953-chr15:56307893..56310459,2	MCF-7	breast:
21	chr15:56274993..56280197-chr15:56282390..56286830,6	MCF-7	breast:
22	chr15:56284668..56287599-chr15:56288074..56291098,3	K562	blood:
23	chr15:56292596..56295463-chr15:56332389..56335036,2	MCF-7	breast:
24	chr15:56249710..56252114-chr15:56284678..56286584,2	MCF-7	breast:
25	chr14:55737712..55738366-chr15:56285235..56286222,2	Hela-S3	cervix:
26	chr15:56275489..56279024-chr15:56279462..56282619,5	K562	blood:
27	chr15:56251937..56254023-chr15:56256235..56258687,3	K562	blood:
28	chr15:56281891..56284127-chr15:56288031..56290159,2	K562	blood:
29	chr15:56275489..56278398-chr15:56279462..56282619,4	K562	blood:
30	chr15:56282050..56287467-chr15:56534024..56538662,8	MCF-7	breast:
31	chr15:56285499..56287418-chr15:56534884..56536553,2	K562	blood:
32	chr15:56285724..56286656-chr8:8559373..8559873,2	Hela-S3	cervix:
33	chr15:56284954..56286880-chr15:56299616..56301777,2	K562	blood:
34	chr15:56286056..56286943-chr15:56344508..56345311,2	MCF-7	breast:
35	chr15:56304158..56307081-chr15:56310322..56313297,2	K562	blood:
36	chr15:56242510..56244333-chr15:56247480..56249699,2	MCF-7	breast:
37	chr15:56260979..56263208-chr15:56266401..56268573,2	MCF-7	breast:
38	chr15:56276877..56278529-chr15:56290959..56293005,2	MCF-7	breast:
39	chr15:56271136..56275778-chr15:56283975..56288276,6	K562	blood:
40	chr15:56281435..56283774-chr15:56390486..56392704,2	MCF-7	breast:
41	chr15:56242510..56244333-chr15:56247480..56249699,2	MCF-7	breast:
42	chr15:56229297..56231144-chr15:56284822..56287576,2	MCF-7	breast:
43	chr15:56279620..56282017-chr15:56535404..56538288,2	MCF-7	breast:
44	chr15:56272827..56275263-chr15:56276968..56278689,2	MCF-7	breast:
45	chr15:56269452..56273528-chr15:56284245..56287674,5	MCF-7	breast:
46	chr15:56272827..56275263-chr15:56276968..56278689,2	MCF-7	breast:
47	chr15:56283971..56286834-chr15:56291176..56293680,2	K562	blood:
48	chr15:56281891..56284127-chr15:56288031..56290159,2	K562	blood:
49	chr1:100503143..100503837-chr15:56285483..56286241,2	Hela-S3	cervix:
50	chr1:233748980..233749780-chr15:56285541..56286277,2	Hela-S3	cervix:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RFX7-3	chr15:56285709-56285811	NONHSAT044012
2	lnc-RFX7-2	chr15:56293601-56293799	l_1162_chr15:56293600-56416163_liver
3	lnc-RFX7-3	chr15:56279929-56280199	NONHSAT044012
4	lnc-NEDD4-1	chr15:56321886-56322179	NONHSAT044013
5	lnc-RFX7-2	chr15:56305102-56305262	l_1162_chr15:56293600-56416163_liver
6	lnc-RFX7-2	chr15:56321306-56321486	l_1162_chr15:56293600-56416163_liver

No data

Variant related genes	Relation type
RN7SL568P	TF binding region
NEDD4	TF binding region
ENSG00000238513	TF binding region
CNOT6LP1	TF binding region
RN7SL568P	CpG island
NEDD4	CpG island
ENSG00000238513	CpG island
CNOT6LP1	CpG island
ENSG00000181827	chromatin interactions
ENSG00000238513	chromatin interactions
ENSG00000069869	chromatin interactions
ENSG00000196511	chromatin interactions
ENSG00000156875	chromatin interactions
ENSG00000201558	chromatin interactions
ENSG00000163191	chromatin interactions
ENSG00000258413	chromatin interactions
ENSG00000135750	chromatin interactions
ENSG00000151575	chromatin interactions
ENSG00000253958	chromatin interactions
ENSG00000176305	chromatin interactions
ENSG00000178974	chromatin interactions
ENSG00000230183	chromatin interactions
ENSG00000162419	chromatin interactions
ENSG00000134186	chromatin interactions
ENSG00000233396	chromatin interactions

Extended variants
information (count: 3663 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:3663 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1509406	chr15:56229760-56229761	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs533402318	chr15:56229800-56229801	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs540921129	chr15:56229834-56229835	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs567129206	chr15:56229883-56229884	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs528863004	chr15:56229925-56229926	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs548581837	chr15:56229981-56229982	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs535788980	chr15:56230068-56230069	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs188215678	chr15:56230082-56230083	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs531306216	chr15:56230124-56230125	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs551119254	chr15:56230131-56230132	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs376399663	chr15:56230168-56230169	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs542647143	chr15:56230181-56230182	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs180702487	chr15:56230268-56230269	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs147818405	chr15:56230284-56230285	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs567464910	chr15:56230285-56230286	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs55926597	chr15:56230373-56230374	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs555801903	chr15:56230419-56230420	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs374195130	chr15:56230426-56230427	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs12901802	chr15:56230476-56230477	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs147653133	chr15:56230487-56230488	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs111418895	chr15:56230489-56230490	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs9920158	chr15:56230498-56230499	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs9920159	chr15:56230501-56230502	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs187183791	chr15:56230505-56230506	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs529562985	chr15:56230506-56230507	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs148316623	chr15:56230515-56230516	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs576887900	chr15:56230601-56230602	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs562152260	chr15:56230608-56230609	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs545956934	chr15:56230609-56230610	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs531245385	chr15:56230717-56230718	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs140511198	chr15:56230722-56230723	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs55747940	chr15:56230741-56230742	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs145725382	chr15:56230791-56230792	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs78717701	chr15:56230810-56230811	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs7163864	chr15:56230811-56230812	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs114991606	chr15:56230830-56230831	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs192489901	chr15:56230867-56230868	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs114465327	chr15:56230871-56230872	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs569274653	chr15:56230884-56230885	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs529205814	chr15:56230892-56230893	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs142999433	chr15:56230939-56230940	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs542191516	chr15:56230987-56230988	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183820086	chr15:56230988-56230989	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs533443508	chr15:56230991-56230992	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs551937449	chr15:56231037-56231038	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs554073197	chr15:56231066-56231067	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs146152545	chr15:56231079-56231080	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs118055931	chr15:56231081-56231082	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs376973985	chr15:56231098-56231099	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs575609426	chr15:56231165-56231166	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Gastric adenocarcinoma	19115996	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1347 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:56208800-56230000	Weak transcription	Liver	Liver
3	chr15:56209000-56230400	Weak transcription	Primary T cells from cord blood	blood
4	chr15:56209200-56230200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:56209200-56230200	Weak transcription	Aorta	Aorta
6	chr15:56209600-56230800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:56209600-56247400	Weak transcription	Psoas Muscle	Psoas
8	chr15:56210200-56229800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:56211400-56230800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:56211800-56242400	Weak transcription	Hela-S3	cervix
11	chr15:56216800-56230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:56217200-56230000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:56218800-56230200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:56219200-56230200	Weak transcription	Fetal Intestine Small	intestine
15	chr15:56221600-56242400	Weak transcription	NHEK	skin
16	chr15:56221800-56230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:56222200-56234200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:56224000-56230000	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:56226200-56245800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:56227400-56230600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:56228200-56230000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:56228600-56230600	Weak transcription	Fetal Lung	lung
23	chr15:56228800-56229800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:56228800-56229800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:56228800-56234600	Weak transcription	Placenta	Placenta
26	chr15:56229000-56231400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:56229200-56229800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:56229200-56229800	Enhancers	HUVEC	blood vessel
29	chr15:56229200-56230000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr15:56229200-56230000	Enhancers	Fetal Kidney	kidney
31	chr15:56229200-56230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:56229400-56229800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:56229400-56230000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:56229400-56230800	ZNF genes & repeats	A549	lung
35	chr15:56229400-56234600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:56229400-56259000	Weak transcription	Ovary	ovary
37	chr15:56229400-56259400	Weak transcription	Small Intestine	intestine
38	chr15:56229600-56229800	Enhancers	Osteobl	bone
39	chr15:56229600-56230000	Weak transcription	HSMM	muscle
40	chr15:56229600-56233400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:56229600-56251600	Weak transcription	K562	blood
42	chr15:56229600-56282600	Weak transcription	NHLF	lung
43	chr15:56229800-56230000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:56229800-56231000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
45	chr15:56229800-56233000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
46	chr15:56229800-56234000	Weak transcription	HUVEC	blood vessel
47	chr15:56229800-56235200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr15:56229800-56235400	Weak transcription	Dnd41	blood
49	chr15:56229800-56242600	Weak transcription	Osteobl	bone
50	chr15:56229800-56259000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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