Variant report

Variant	rs540921129
Chromosome Location	chr15:56229834-56229835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56229297..56231144-chr15:56284822..56287576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56201000-56230000	Weak transcription	Fetal Intestine Large	intestine
2	chr15:56208800-56230000	Weak transcription	Liver	Liver
3	chr15:56209000-56230400	Weak transcription	Primary T cells from cord blood	blood
4	chr15:56209200-56230200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:56209200-56230200	Weak transcription	Aorta	Aorta
6	chr15:56209600-56230800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:56209600-56247400	Weak transcription	Psoas Muscle	Psoas
8	chr15:56211400-56230800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:56211800-56242400	Weak transcription	Hela-S3	cervix
10	chr15:56216800-56230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:56217200-56230000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:56218800-56230200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:56219200-56230200	Weak transcription	Fetal Intestine Small	intestine
14	chr15:56221600-56242400	Weak transcription	NHEK	skin
15	chr15:56221800-56230200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:56222200-56234200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:56224000-56230000	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:56226200-56245800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:56227400-56230600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:56228200-56230000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:56228600-56230600	Weak transcription	Fetal Lung	lung
22	chr15:56228800-56234600	Weak transcription	Placenta	Placenta
23	chr15:56229000-56231400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:56229200-56230000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:56229200-56230000	Enhancers	Fetal Kidney	kidney
26	chr15:56229200-56230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:56229400-56230000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:56229400-56230800	ZNF genes & repeats	A549	lung
29	chr15:56229400-56234600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:56229400-56259000	Weak transcription	Ovary	ovary
31	chr15:56229400-56259400	Weak transcription	Small Intestine	intestine
32	chr15:56229600-56230000	Weak transcription	HSMM	muscle
33	chr15:56229600-56233400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:56229600-56251600	Weak transcription	K562	blood
35	chr15:56229600-56282600	Weak transcription	NHLF	lung
36	chr15:56229800-56230000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:56229800-56231000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr15:56229800-56233000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
39	chr15:56229800-56234000	Weak transcription	HUVEC	blood vessel
40	chr15:56229800-56235200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:56229800-56235400	Weak transcription	Dnd41	blood
42	chr15:56229800-56242600	Weak transcription	Osteobl	bone
43	chr15:56229800-56259000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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