Variant report

Variant	nsv904419
Chromosome Location	chr15:77897197-77943935
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1806)
CpG islands
(count:1771)
Chromatin interactive
region (count:111)
LncRNA
region (count:24)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1806 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:77926765-77927030	K562	blood:	n/a	n/a
2	ARID3A	chr15:77942736-77942925	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:77912745-77912914	K562	blood:	n/a	n/a
4	ARID3A	chr15:77915025-77915043	K562	blood:	n/a	n/a
5	ARID3A	chr15:77925899-77926076	K562	blood:	n/a	n/a
6	ATF2	chr15:77915941-77916411	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr15:77915698-77916516	H1-hESC	embryonic stem cell:	n/a	n/a
8	ATF2	chr15:77925461-77927008	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr15:77925762-77927046	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF3	chr15:77942662-77942999	K562	blood:	n/a	n/a
11	ATF3	chr15:77925754-77926241	A549	lung:	n/a	n/a
12	ATF3	chr15:77925816-77926085	K562	blood:	n/a	n/a
13	ATF3	chr15:77925857-77926179	GM12878	blood:	n/a	n/a
14	ATF3	chr15:77925817-77926099	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr15:77925732-77926191	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr15:77926761-77927026	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr15:77897153-77897255	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr15:77915577-77915777	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr15:77925619-77926520	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr15:77899147-77899415	H1-hESC	embryonic stem cell:	n/a	n/a
21	BCL3	chr15:77925412-77926262	A549	lung:	n/a	chr15:77925420-77925433
22	BCLAF1	chr15:77925756-77926123	GM12878	blood:	n/a	n/a
23	BCLAF1	chr15:77925737-77926107	GM12878	blood:	n/a	n/a
24	BHLHE40	chr15:77926780-77927016	K562	blood:	n/a	n/a
25	BHLHE40	chr15:77899292-77899363	K562	blood:	n/a	n/a
26	BHLHE40	chr15:77925834-77926167	GM12878	blood:	n/a	n/a
27	BHLHE40	chr15:77922594-77922636	K562	blood:	n/a	n/a
28	BHLHE40	chr15:77925559-77926179	K562	blood:	n/a	n/a
29	BHLHE40	chr15:77901103-77901302	K562	blood:	n/a	n/a
30	BHLHE40	chr15:77912708-77912955	K562	blood:	n/a	n/a
31	BHLHE40	chr15:77904325-77904461	K562	blood:	n/a	n/a
32	BHLHE40	chr15:77914524-77915734	K562	blood:	n/a	n/a
33	BRCA1	chr15:77925889-77926125	Hela-S3	cervix:	n/a	n/a
34	BRCA1	chr15:77925929-77926145	GM12878	blood:	n/a	n/a
35	BRCA1	chr15:77925788-77926457	H1-hESC	embryonic stem cell:	n/a	n/a
36	CBX3	chr15:77912604-77913108	K562	blood:	n/a	n/a
37	CBX3	chr15:77925518-77926182	K562	blood:	n/a	n/a
38	CBX3	chr15:77926671-77927062	K562	blood:	n/a	n/a
39	CBX3	chr15:77897291-77897710	K562	blood:	n/a	n/a
40	CBX3	chr15:77916009-77916436	K562	blood:	n/a	n/a
41	CBX3	chr15:77915330-77915744	K562	blood:	n/a	n/a
42	CBX3	chr15:77914464-77915225	K562	blood:	n/a	n/a
43	CBX3	chr15:77913865-77914196	K562	blood:	n/a	n/a
44	CCNT2	chr15:77914800-77915263	K562	blood:	n/a	n/a
45	CCNT2	chr15:77915680-77916061	K562	blood:	n/a	chr15:77915777-77915797 chr15:77916007-77916016
46	CCNT2	chr15:77925101-77926149	K562	blood:	n/a	chr15:77925365-77925374
47	CEBPB	chr15:77925907-77926023	HepG2	liver:	n/a	n/a
48	CEBPB	chr15:77900332-77900605	K562	blood:	n/a	chr15:77900458-77900469
49	CEBPB	chr15:77901159-77901496	K562	blood:	n/a	chr15:77901315-77901328
50	CEBPB	chr15:77925521-77925770	K562	blood:	n/a	n/a

(count:1771 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:77910606-77910656	HPAEpiC	pulmonary alveolar:	n/a
2	chr15:77927305-77927355	AG09319	gingival:	n/a
3	chr15:77910606-77910656	HPAEpiC	pulmonary alveolar:	n/a
4	chr15:77927305-77927355	AG09319	gingival:	n/a
5	chr15:77933790-77933840	IMR90	lung:	fetal
6	chr15:77924281-77924331	AG04449	skin:	fetal
7	chr15:77906127-77906177	AG10803	skin:	n/a
8	chr15:77898183-77898233	SAEC	small airway:	n/a
9	chr15:77933790-77933840	MCF10A-Er-Src	breast:	n/a
10	chr15:77898183-77898233	PFSK-1	brain:	n/a
11	chr15:77907530-77907580	Jurkat	blood:	n/a
12	chr15:77900788-77900838	NB4	blood:	n/a
13	chr15:77933917-77933967	NB4	blood:	n/a
14	chr15:77933790-77933840	SK-N-MC	brain:	n/a
15	chr15:77906469-77906519	Hepatocyte	liver:	n/a
16	chr15:77927358-77927408	NT2-D1	testis:	n/a
17	chr15:77927361-77927411	HepG2	liver:	n/a
18	chr15:77900788-77900838	HIPEpiC	eye:	n/a
19	chr15:77910606-77910656	HNPCEpiC	eye:	n/a
20	chr15:77933785-77933835	HEK293	kidney:	embryo
21	chr15:77899670-77899720	HAEpiC	amniotic membrane:	n/a
22	chr15:77922163-77922213	HRCEpiC	kidney:	n/a
23	chr15:77922163-77922213	Hela-S3	cervix:	n/a
24	chr15:77933785-77933835	HRE	kidney:	n/a
25	chr15:77924697-77924747	T-47D	breast:	n/a
26	chr15:77904385-77904435	AoSMC	blood vessel:	n/a
27	chr15:77906127-77906177	Jurkat	blood:	n/a
28	chr15:77908135-77908185	NHDF-neo	bronchial:	n/a
29	chr15:77906469-77906519	HPAEpiC	pulmonary alveolar:	n/a
30	chr15:77925892-77925942	MCF-7	breast:	n/a
31	chr15:77925960-77926010	ECC-1	luminal epithelium:	n/a
32	chr15:77928919-77928969	AG10803	skin:	n/a
33	chr15:77897206-77897256	NHDF-neo	bronchial:	n/a
34	chr15:77922677-77922727	GM12891	blood:	n/a
35	chr15:77900788-77900838	HEEpiC	esophagus:	n/a
36	chr15:77928919-77928969	NT2-D1	testis:	n/a
37	chr15:77925892-77925942	HCF	heart:	n/a
38	chr15:77900788-77900838	HEK293	kidney:	embryo
39	chr15:77907530-77907580	NT2-D1	testis:	n/a
40	chr15:77924697-77924747	HRCEpiC	kidney:	n/a
41	chr15:77929666-77929716	Caco-2	colon:	n/a
42	chr15:77933917-77933967	HIPEpiC	eye:	n/a
43	chr15:77927361-77927411	NT2-D1	testis:	n/a
44	chr15:77927358-77927408	GM19239	blood:	n/a
45	chr15:77924697-77924747	HNPCEpiC	eye:	n/a
46	chr15:77907530-77907580	AG09319	gingival:	n/a
47	chr15:77897206-77897256	HPAEpiC	pulmonary alveolar:	n/a
48	chr15:77925892-77925942	HMEC	breast:	n/a
49	chr15:77900788-77900838	AG09319	gingival:	n/a
50	chr15:77904385-77904435	PANC-1	pancreas:	n/a

(count:111 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr15:77895225..77896761-chr15:77915510..77917012,2	K562	blood:
2	chr15:77939682..77942275-chr15:77956399..77958298,2	MCF-7	breast:
3	chr15:77927989..77932022-chr15:77933693..77937176,6	K562	blood:
4	chr15:77925509..77926398-chr15:78076937..78077835,4	K562	blood:
5	chr15:77900844..77903141-chr15:77904661..77906674,2	K562	blood:
6	chr15:77925532..77926425-chr15:78076783..78078398,4	MCF-7	breast:
7	chr15:77893403..77895031-chr15:77900449..77902980,2	K562	blood:
8	chr15:77924601..77927275-chr15:77937272..77938910,2	K562	blood:
9	chr15:77930337..77932022-chr15:77933693..77936682,2	K562	blood:
10	chr15:77917075..77919713-chr15:77934421..77936689,2	MCF-7	breast:
11	chr15:77914562..77916092-chr15:77921484..77924358,2	MCF-7	breast:
12	chr15:77908642..77910166-chr15:77913466..77916078,2	MCF-7	breast:
13	chr15:77926698..77928808-chr15:77930384..77933338,2	K562	blood:
14	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:
15	chr15:77897697..77899508-chr15:77917213..77919192,2	K562	blood:
16	chr15:77835734..77836523-chr15:77909574..77910418,2	MCF-7	breast:
17	chr15:77925580..77926309-chr15:78156358..78157211,2	MCF-7	breast:
18	chr15:77904297..77907501-chr15:77908507..77911725,4	K562	blood:
19	chr15:77936103..77940000-chr15:77942222..77946608,4	MCF-7	breast:
20	chr15:77924601..77927275-chr15:77937272..77938910,2	K562	blood:
21	chr15:77925887..77926426-chr19:40734602..40735348,2	MCF-7	breast:
22	chr15:77899584..77901870-chr15:77910990..77913716,3	K562	blood:
23	chr15:77927525..77929710-chr15:77946068..77948764,2	K562	blood:
24	chr15:77912184..77913186-chr15:77925455..77926450,5	K562	blood:
25	chr11:60252998..60253911-chr15:77925589..77926334,2	MCF-7	breast:
26	chr15:77835401..77836400-chr15:77925681..77926470,4	K562	blood:
27	chr15:77901988..77905265-chr15:77907024..77909154,3	MCF-7	breast:
28	chr15:77904297..77907501-chr15:77908507..77911725,4	K562	blood:
29	chr15:77896964..77898473-chr15:77923112..77926055,2	K562	blood:
30	chr15:77923378..77927661-chr15:77939712..77941850,3	MCF-7	breast:
31	chr15:77917906..77920772-chr15:78100061..78102458,2	K562	blood:
32	chr15:77835573..77836399-chr15:77908014..77909056,3	MCF-7	breast:
33	chr15:77925566..77926501-chr15:77951718..77952824,3	K562	blood:
34	chr15:77901709..77903452-chr15:77906613..77909214,2	MCF-7	breast:
35	chr15:77929818..77931904-chr15:77938499..77941126,2	K562	blood:
36	chr15:77924941..77926828-chr15:77932359..77934227,2	MCF-7	breast:
37	chr15:77900844..77903141-chr15:77904661..77906674,2	K562	blood:
38	chr15:77902198..77904238-chr15:77912623..77914841,2	K562	blood:
39	chr15:77909277..77910127-chr15:77925790..77926339,2	MCF-7	breast:
40	chr15:77925387..77926440-chr15:77951721..77952677,7	MCF-7	breast:
41	chr15:77925519..77926294-chr15:78162494..78163468,3	MCF-7	breast:
42	chr15:77912527..77913180-chr15:77925436..77926049,2	MCF-7	breast:
43	chr15:77916170..77919040-chr15:77941175..77943585,2	K562	blood:
44	chr15:77899424..77903075-chr15:77914224..77917029,3	K562	blood:
45	chr15:77925576..77926405-chr15:78167119..78167924,3	K562	blood:
46	chr15:77908642..77910166-chr15:77913466..77916078,2	MCF-7	breast:
47	chr15:77925603..77926173-chr15:77946987..77947667,2	MCF-7	breast:
48	chr15:77898597..77902901-chr15:77907031..77910421,4	K562	blood:
49	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
50	chr15:77917075..77919713-chr15:77934421..77936689,2	MCF-7	breast:

(count:24 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMG20A-3	chr15:77934106-77934299	ENSG00000249469
2	lnc-HMG20A-3	chr15:77940435-77940672	NONHSAT047455
3	lnc-HMG20A-3	chr15:77938650-77938853	NONHSAT047452
4	lnc-HMG20A-3	chr15:77943677-77944620	NONHSAT047452
5	lnc-HMG20A-3	chr15:77938650-77938853	NONHSAT047451
6	lnc-HMG20A-3	chr15:77943677-77944620	NONHSAT047455
7	lnc-HMG20A-3	chr15:77938650-77938853	NONHSAT047453
8	lnc-HMG20A-3	chr15:77938700-77938853	ENSG00000259666.1
9	lnc-HMG20A-3	chr15:77940181-77940303	ENSG00000259666.1
10	lnc-HMG20A-3	chr15:77943677-77943997	ENSG00000259666.1
11	lnc-HMG20A-3	chr15:77934106-77934299	NR_045123
12	lnc-HMG20A-3	chr15:77934106-77934299	ENSG00000259666.1
13	lnc-HMG20A-3	chr15:77938684-77938853	ENSG00000259666.1
14	lnc-HMG20A-3	chr15:77940181-77941581	NR_045123
15	lnc-HMG20A-3	chr15:77938730-77938853	ENSG00000249469
16	lnc-HMG20A-3	chr15:77938730-77938853	NR_045123
17	lnc-HMG20A-2	chr15:77900882-77901023	ENSG00000259420.1
18	lnc-HMG20A-3	chr15:77940560-77940838	NONHSAT047453
19	lnc-HMG20A-3	chr15:77940486-77940672	NONHSAT047452
20	lnc-HMG20A-3	chr15:77943677-77944620	NONHSAT047451
21	lnc-HMG20A-3	chr15:77940486-77940543	ENSG00000259666.1
22	lnc-HMG20A-3	chr15:77940181-77941579	ENSG00000249469
23	lnc-HMG20A-3	chr15:77938730-77938853	ENSG00000259666.1
24	lnc-HMG20A-3	chr15:77940181-77941582	ENSG00000259666.1

No data

Variant related genes	Relation type
ENSG00000259666	TF binding region
LINGO1	TF binding region
ENSG00000259666	CpG island
LINGO1	CpG island
ENSG00000169783	chromatin interactions
ENSG00000259281	chromatin interactions
ENSG00000259666	chromatin interactions
DDX3X	miRNA target sites

Extended variants
information (count: 1856 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:1856 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16968998	chr15:77897197-77897198	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs78487929	chr15:77897200-77897201	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs200333823	chr15:77897211-77897212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs201152823	chr15:77897214-77897215	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs202146600	chr15:77897215-77897216	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs73450956	chr15:77897220-77897221	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs28477219	chr15:77897247-77897248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs142739863	chr15:77897256-77897257	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs16968999	chr15:77897346-77897347	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs114829373	chr15:77897390-77897391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs369109578	chr15:77897429-77897430	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs150586101	chr15:77897456-77897457	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs907389	chr15:77897476-77897477	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs552700041	chr15:77897569-77897570	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs182826410	chr15:77897637-77897638	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs376979461	chr15:77897661-77897662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs543162943	chr15:77897695-77897696	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs561325616	chr15:77897708-77897709	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs199976482	chr15:77897757-77897758	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs576645268	chr15:77897803-77897804	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs884527	chr15:77897814-77897815	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs375466495	chr15:77897829-77897830	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs187119622	chr15:77897839-77897840	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs532578608	chr15:77897878-77897879	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs139258538	chr15:77897879-77897880	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs191553063	chr15:77897880-77897881	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs530220887	chr15:77897901-77897902	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs548339217	chr15:77897914-77897915	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs114875143	chr15:77898067-77898068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs537338856	chr15:77898105-77898106	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs552218243	chr15:77898106-77898107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs570113307	chr15:77898136-77898137	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs531167557	chr15:77898178-77898179	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs376874409	chr15:77898194-77898195	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs4886887	chr15:77898203-77898204	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs574145617	chr15:77898204-77898205	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs535216927	chr15:77898258-77898259	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs555109294	chr15:77898259-77898260	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs576592909	chr15:77898271-77898272	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs74917027	chr15:77898281-77898282	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs565624350	chr15:77898307-77898308	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs577300183	chr15:77898312-77898313	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs541391476	chr15:77898313-77898314	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs144177559	chr15:77898315-77898316	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs553697163	chr15:77898352-77898353	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs564605951	chr15:77898382-77898383	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs146584051	chr15:77898383-77898384	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs4886888	chr15:77898384-77898385	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs59401622	chr15:77898396-77898397	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs530667197	chr15:77898406-77898407	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1434 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77891000-77898800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:77892200-77897200	Weak transcription	Gastric	stomach
3	chr15:77892200-77897600	Weak transcription	Right Ventricle	heart
4	chr15:77892800-77897200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:77893200-77897200	Weak transcription	K562	blood
6	chr15:77895000-77898600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:77895800-77899800	Enhancers	Fetal Heart	heart
8	chr15:77895800-77901200	Enhancers	Fetal Muscle Leg	muscle
9	chr15:77896000-77897200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:77896000-77897200	Enhancers	Fetal Brain Male	brain
11	chr15:77896200-77897800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:77896200-77897800	Enhancers	Fetal Lung	lung
13	chr15:77896200-77898000	Enhancers	Fetal Stomach	stomach
14	chr15:77896200-77900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:77896200-77900600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:77896400-77897200	Enhancers	Fetal Kidney	kidney
17	chr15:77896400-77897400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:77896400-77897400	Enhancers	Placenta	Placenta
19	chr15:77896400-77898800	Weak transcription	Left Ventricle	heart
20	chr15:77896400-77900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:77896600-77897200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr15:77896600-77897200	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr15:77896600-77897200	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr15:77896600-77897200	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr15:77896600-77897200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr15:77896600-77897200	Active TSS	Brain Substantia Nigra	brain
27	chr15:77896600-77897200	ZNF genes & repeats	Spleen	Spleen
28	chr15:77896600-77897400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
29	chr15:77896600-77897400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr15:77896600-77897600	Flanking Active TSS	Fetal Brain Female	brain
31	chr15:77896600-77898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr15:77896600-77901400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:77896800-77897200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:77896800-77897200	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr15:77896800-77897200	Active TSS	Brain Germinal Matrix	brain
36	chr15:77896800-77897200	Enhancers	Fetal Muscle Trunk	muscle
37	chr15:77896800-77898800	Enhancers	Lung	lung
38	chr15:77896800-77899400	Enhancers	Colonic Mucosa	Colon
39	chr15:77896800-77899600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:77896800-77899800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:77896800-77901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:77897000-77897200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:77897000-77897200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:77897000-77897200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:77897000-77897200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
46	chr15:77897000-77897200	Active TSS	Stomach Smooth Muscle	stomach
47	chr15:77897000-77897400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr15:77897000-77897400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:77897000-77897400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:77897000-77897400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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