Variant report

Variant	rs561325616
Chromosome Location	chr15:77897708-77897709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77890507..77893828-chr15:77894009..77899298,4	MCF-7	breast:
2	chr15:77896964..77898473-chr15:77923112..77926055,2	K562	blood:
3	chr15:77897697..77899508-chr15:77917213..77919192,2	K562	blood:

Variant related genes	Relation type
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1036749	chr15:77884026-77912408	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv904419	chr15:77897197-77943935	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77891000-77898800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:77895000-77898600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:77895800-77899800	Enhancers	Fetal Heart	heart
4	chr15:77895800-77901200	Enhancers	Fetal Muscle Leg	muscle
5	chr15:77896200-77897800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:77896200-77897800	Enhancers	Fetal Lung	lung
7	chr15:77896200-77898000	Enhancers	Fetal Stomach	stomach
8	chr15:77896200-77900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:77896200-77900600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:77896400-77898800	Weak transcription	Left Ventricle	heart
11	chr15:77896400-77900200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:77896600-77898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:77896600-77901400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:77896800-77898800	Enhancers	Lung	lung
15	chr15:77896800-77899400	Enhancers	Colonic Mucosa	Colon
16	chr15:77896800-77899600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:77896800-77899800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:77896800-77901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:77897000-77897800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:77897000-77897800	Enhancers	Fetal Thymus	thymus
21	chr15:77897000-77898200	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:77897000-77899000	Bivalent Enhancer	Fetal Intestine Small	intestine
23	chr15:77897000-77901000	Enhancers	Right Atrium	heart
24	chr15:77897200-77897800	Enhancers	Primary B cells from cord blood	blood
25	chr15:77897200-77897800	Weak transcription	Spleen	Spleen
26	chr15:77897200-77898200	Enhancers	Stomach Mucosa	stomach
27	chr15:77897200-77898600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:77897200-77898600	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr15:77897200-77900200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr15:77897200-77901800	Enhancers	K562	blood
31	chr15:77897200-77903000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr15:77897400-77898200	Enhancers	Brain Anterior Caudate	brain
33	chr15:77897400-77898200	Enhancers	Brain Substantia Nigra	brain
34	chr15:77897400-77898200	Bivalent Enhancer	Placenta	Placenta
35	chr15:77897400-77899200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr15:77897400-77899200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:77897400-77899400	Enhancers	H9 Cell Line	embryonic stem cell
38	chr15:77897400-77899600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr15:77897400-77899600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr15:77897400-77899800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr15:77897400-77900000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr15:77897400-77900200	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr15:77897400-77900800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:77897400-77901000	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr15:77897400-77901400	Enhancers	Brain Angular Gyrus	brain
46	chr15:77897400-77901400	Enhancers	Brain Cingulate Gyrus	brain
47	chr15:77897400-77901400	Enhancers	Brain Hippocampus Middle	brain
48	chr15:77897400-77901600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr15:77897400-77903800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:77897600-77897800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links