Variant report

Variant	nsv912817
Chromosome Location	chr20:23127661-23240969
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2586)
CpG islands
(count:0)
Chromatin interactive
region (count:122)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2586 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:23132989-23133541	K562	blood:	n/a	n/a
2	ARID3A	chr20:23127943-23128995	K562	blood:	n/a	n/a
3	ARID3A	chr20:23134572-23134923	K562	blood:	n/a	n/a
4	ARID3A	chr20:23132967-23133286	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:23136788-23137110	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:23216101-23216320	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:23136772-23137288	K562	blood:	n/a	n/a
8	ARID3A	chr20:23181693-23181807	HepG2	liver:	n/a	n/a
9	ARID3A	chr20:23128078-23129295	HepG2	liver:	n/a	n/a
10	ARID3A	chr20:23213220-23213698	HepG2	liver:	n/a	n/a
11	ARID3A	chr20:23174714-23174842	K562	blood:	n/a	n/a
12	ATF1	chr20:23128264-23128842	K562	blood:	n/a	n/a
13	ATF1	chr20:23132970-23133423	K562	blood:	n/a	n/a
14	ATF1	chr20:23134619-23134935	K562	blood:	n/a	n/a
15	ATF1	chr20:23139940-23140208	K562	blood:	n/a	n/a
16	ATF1	chr20:23135836-23136097	K562	blood:	n/a	n/a
17	ATF1	chr20:23174598-23174987	K562	blood:	n/a	n/a
18	ATF1	chr20:23136677-23137183	K562	blood:	n/a	n/a
19	ATF2	chr20:23227971-23228241	GM12878	blood:	n/a	n/a
20	ATF2	chr20:23128323-23129439	GM12878	blood:	n/a	n/a
21	ATF2	chr20:23128244-23129405	GM12878	blood:	n/a	n/a
22	ATF3	chr20:23136778-23137153	K562	blood:	n/a	n/a
23	ATF3	chr20:23128382-23128888	K562	blood:	n/a	n/a
24	ATF3	chr20:23133066-23133289	K562	blood:	n/a	n/a
25	ATF3	chr20:23132947-23133430	K562	blood:	n/a	n/a
26	ATF3	chr20:23128525-23128770	K562	blood:	n/a	n/a
27	ATF3	chr20:23136815-23137056	K562	blood:	n/a	n/a
28	BACH1	chr20:23174740-23174743	K562	blood:	n/a	n/a
29	BACH1	chr20:23221209-23221462	K562	blood:	n/a	n/a
30	BACH1	chr20:23133199-23133327	K562	blood:	n/a	n/a
31	BACH1	chr20:23181747-23181753	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr20:23132626-23132930	K562	blood:	n/a	n/a
33	BATF	chr20:23136792-23137082	GM12878	blood:	n/a	chr20:23136921-23136930 chr20:23136968-23136978 chr20:23136967-23136978
34	BATF	chr20:23128485-23128779	GM12878	blood:	n/a	n/a
35	BATF	chr20:23128225-23128948	GM12878	blood:	n/a	n/a
36	BATF	chr20:23228026-23228237	GM12878	blood:	n/a	n/a
37	BCL11A	chr20:23128287-23128961	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
38	BCL11A	chr20:23136747-23137035	GM12878	blood:	n/a	n/a
39	BCL11A	chr20:23128510-23128805	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
40	BCL11A	chr20:23227944-23228176	GM12878	blood:	n/a	n/a
41	BCL3	chr20:23142074-23142387	GM12878	blood:	n/a	n/a
42	BCL3	chr20:23136727-23137112	GM12878	blood:	n/a	n/a
43	BCL3	chr20:23128408-23128882	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
44	BCL3	chr20:23128256-23129504	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
45	BCL3	chr20:23136693-23137102	GM12878	blood:	n/a	n/a
46	BCLAF1	chr20:23132844-23133397	K562	blood:	n/a	n/a
47	BCLAF1	chr20:23128378-23128917	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
48	BCLAF1	chr20:23128451-23128936	GM12878	blood:	n/a	chr20:23128675-23128684 chr20:23128676-23128685
49	BHLHE40	chr20:23128111-23129412	K562	blood:	n/a	n/a
50	BHLHE40	chr20:23129752-23130290	K562	blood:	n/a	n/a

No data

(count:122 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr20:23173550..23175441-chr20:23179224..23181550,2	K562	blood:
2	chr20:23226182..23226684-chr20:23321088..23321781,2	MCF-7	breast:
3	chr20:23128655..23130225-chr20:23192779..23194718,2	K562	blood:
4	chr20:22391351..22394320-chr20:23127644..23129795,2	K562	blood:
5	chr20:23129251..23133596-chr20:23289860..23293957,6	K562	blood:
6	chr20:23180782..23182510-chr20:23188143..23190298,2	MCF-7	breast:
7	chr20:23030571..23033059-chr20:23188435..23191076,2	MCF-7	breast:
8	chr20:23038702..23039550-chr20:23145856..23146435,3	MCF-7	breast:
9	chr20:23031208..23032065-chr20:23181288..23182112,3	MCF-7	breast:
10	chr20:23128719..23130340-chr20:23179847..23182584,2	K562	blood:
11	chr20:23180909..23182813-chr20:23193435..23195375,2	MCF-7	breast:
12	chr20:23126510..23128987-chr20:23134466..23137305,2	MCF-7	breast:
13	chr20:23128094..23130694-chr20:23194983..23196835,2	K562	blood:
14	chr20:23206231..23209945-chr20:23213936..23217641,4	MCF-7	breast:
15	chr20:23127669..23129280-chr20:23170551..23172653,2	K562	blood:
16	chr20:23186331..23188352-chr20:23190022..23192258,2	K562	blood:
17	chr20:23129825..23131611-chr20:23330855..23333303,2	K562	blood:
18	chr20:23184876..23187831-chr20:23190758..23193242,2	K562	blood:
19	chr20:23181615..23184687-chr20:23185020..23187580,3	K562	blood:
20	chr20:23080110..23082822-chr20:23132025..23133564,2	K562	blood:
21	chr20:23031492..23032347-chr20:23180782..23182215,4	K562	blood:
22	chr20:22808161..22811157-chr20:23128815..23130470,2	K562	blood:
23	chr20:23159913..23161586-chr20:23172008..23174904,2	K562	blood:
24	chr20:23028981..23031490-chr20:23192901..23195286,2	MCF-7	breast:
25	chr20:23159913..23161586-chr20:23172008..23174904,2	K562	blood:
26	chr20:23181724..23187567-chr20:23190860..23194115,6	MCF-7	breast:
27	chr20:23237248..23239097-chr20:23330610..23332850,2	MCF-7	breast:
28	chr20:22794571..22796277-chr20:23186495..23188754,2	MCF-7	breast:
29	chr20:23122546..23124571-chr20:23180527..23183160,2	MCF-7	breast:
30	chr20:23131411..23133053-chr20:23183792..23185506,2	K562	blood:
31	chr20:23038451..23039596-chr20:23181254..23182191,4	MCF-7	breast:
32	chr20:23226825..23230641-chr20:23238537..23241083,3	MCF-7	breast:
33	chr20:23092456..23098917-chr20:23127069..23136117,14	K562	blood:
34	chr20:23131411..23133053-chr20:23183792..23185506,2	K562	blood:
35	chr20:23184876..23187831-chr20:23190758..23193242,2	K562	blood:
36	chr20:23180782..23182510-chr20:23188143..23190298,2	MCF-7	breast:
37	chr20:23127669..23129280-chr20:23170551..23172653,2	K562	blood:
38	chr20:23027375..23033068-chr20:23127953..23133190,8	K562	blood:
39	chr20:23118399..23120070-chr20:23194875..23197659,2	K562	blood:
40	chr20:23028507..23030914-chr20:23206513..23209479,3	MCF-7	breast:
41	chr20:23226825..23230641-chr20:23238537..23241083,3	MCF-7	breast:
42	chr20:23167380..23172469-chr20:23172590..23175556,6	K562	blood:
43	chr20:23031273..23031851-chr20:23181325..23181849,2	MCF-7	breast:
44	chr20:23145677..23147489-chr20:23148679..23151441,2	MCF-7	breast:
45	chr20:23139207..23141620-chr20:23172771..23174787,2	K562	blood:
46	chr20:23064363..23066368-chr20:23127818..23130287,3	K562	blood:
47	chr20:23187473..23190139-chr20:23328538..23331366,2	MCF-7	breast:
48	chr20:23126510..23128987-chr20:23134466..23137305,2	MCF-7	breast:
49	chr20:23182243..23184048-chr20:23189878..23191946,2	MCF-7	breast:
50	chr20:23133379..23136064-chr20:23136582..23138082,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-2	chr20:23167037-23167187	XLOC_013489
2	lnc-SSTR4-2	chr20:23167850-23168277	XLOC_013489
3	lnc-SSTR4-2	chr20:23167037-23167187	XLOC_013489
4	lnc-SSTR4-2	chr20:23168699-23168795	NONHSAT079045
5	lnc-SSTR4-2	chr20:23170420-23170935	XLOC_013489
6	lnc-SSTR4-2	chr20:23167037-23167187	XLOC_013489
7	lnc-SSTR4-2	chr20:23161048-23161165	XLOC_013489
8	lnc-SSTR4-2	chr20:23161048-23161430	XLOC_013489
9	lnc-SSTR4-2	chr20:23167850-23168277	XLOC_013489
10	lnc-SSTR4-2	chr20:23161048-23161165	XLOC_013489
11	lnc-SSTR4-2	chr20:23160769-23160884	XLOC_013489
12	lnc-CD93-3	chr20:23169415-23169661	XLOC_013690
13	lnc-SSTR4-2	chr20:23160769-23160845	XLOC_013489
14	lnc-CD93-3	chr20:23168344-23169272	XLOC_013690
15	lnc-SSTR4-2	chr20:23161692-23161853	XLOC_013489
16	lnc-SSTR4-2	chr20:23170420-23170904	NONHSAT079045
17	lnc-SSTR4-2	chr20:23170420-23170935	XLOC_013489
18	lnc-SSTR4-2	chr20:23167037-23167077	XLOC_013489
19	lnc-SSTR4-2	chr20:23168765-23168795	XLOC_013489
20	lnc-SSTR4-2	chr20:23170420-23170944	XLOC_013489
21	lnc-SSTR4-2	chr20:23160814-23160845	XLOC_013489
22	lnc-SSTR4-2	chr20:23170420-23170907	XLOC_013489
23	lnc-SSTR4-2	chr20:23167850-23168277	XLOC_013489
24	lnc-SSTR4-2	chr20:23168598-23170942	NONHSAT079044
25	lnc-SSTR4-13	chr20:23128723-23130576	NONHSAT079037

No data

Variant related genes	Relation type
RNA5SP478	TF binding region
ENSG00000230387	TF binding region
ENSG00000234646	chromatin interactions
ENSG00000234832	chromatin interactions
ENSG00000125810	chromatin interactions
ENSG00000132661	chromatin interactions
ENSG00000230387	chromatin interactions
ENSG00000201527	chromatin interactions
ENSG00000178726	chromatin interactions
ENSG00000125812	chromatin interactions
ENSG00000230492	chromatin interactions
VDAC1	miRNA target sites
FILIP1L	miRNA target sites
FOXJ3	miRNA target sites
FOSL2	miRNA target sites
FOXF2	miRNA target sites
FOXD1	miRNA target sites
LPIN3	miRNA target sites
ZNF609	miRNA target sites
FOXC1	miRNA target sites
MLLT4	miRNA target sites
RASA4	miRNA target sites

Extended variants
information (count: 4526 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:4526 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6132569	chr20:23127661-23127662	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539713750	chr20:23127663-23127664	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs549816654	chr20:23127698-23127699	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs8183637	chr20:23127722-23127723	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs181803697	chr20:23127738-23127739	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs147465021	chr20:23127787-23127788	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs8183645	chr20:23127804-23127805	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs555438417	chr20:23127814-23127815	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs6036321	chr20:23127828-23127829	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs377507369	chr20:23127845-23127846	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs8183650	chr20:23127862-23127863	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs8183651	chr20:23127871-23127872	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs534874011	chr20:23127886-23127887	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs558058587	chr20:23127891-23127892	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs569605443	chr20:23127909-23127910	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs538738965	chr20:23127932-23127933	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs563354404	chr20:23127944-23127945	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs61570271	chr20:23127951-23127952	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs191301376	chr20:23127953-23127954	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs17682830	chr20:23128010-23128011	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs371018614	chr20:23128029-23128030	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs180873589	chr20:23128033-23128034	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs12624518	chr20:23128037-23128038	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs34426967	chr20:23128046-23128047	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs372536293	chr20:23128080-23128081	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs74332228	chr20:23128089-23128090	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs550053185	chr20:23128118-23128119	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs569597240	chr20:23128119-23128120	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs189885057	chr20:23128153-23128154	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs4815176	chr20:23128200-23128201	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs534387769	chr20:23128240-23128241	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs138381390	chr20:23128259-23128260	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs114675091	chr20:23128263-23128264	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs537354399	chr20:23128271-23128272	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs371968842	chr20:23128282-23128283	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs183226566	chr20:23128318-23128319	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs6083020	chr20:23128329-23128330	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs6083021	chr20:23128375-23128376	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs187990832	chr20:23128394-23128395	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs150647545	chr20:23128423-23128424	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs36037503	chr20:23128430-23128431	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs573388857	chr20:23128438-23128439	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs553665792	chr20:23128444-23128445	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs564276062	chr20:23128451-23128452	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs575024722	chr20:23128461-23128462	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs35633788	chr20:23128470-23128471	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs199947969	chr20:23128509-23128510	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs12625414	chr20:23128519-23128520	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs79433978	chr20:23128568-23128569	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs4813480	chr20:23128579-23128580	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Cancer	20164919	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	17426248	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1745 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23118400-23131000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23119800-23128600	Weak transcription	Gastric	stomach
3	chr20:23120200-23137600	Enhancers	HUVEC	blood vessel
4	chr20:23121000-23128000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23121000-23144200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23121200-23128800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr20:23121200-23128800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:23121200-23130800	Enhancers	HSMM	muscle
9	chr20:23121600-23130800	Enhancers	NH-A	brain
10	chr20:23121600-23138200	Enhancers	Adipose Nuclei	Adipose
11	chr20:23121800-23137600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr20:23121800-23143000	Enhancers	NHDF-Ad	bronchial
13	chr20:23122600-23138000	Enhancers	NHLF	lung
14	chr20:23122800-23128800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:23122800-23130800	Enhancers	Osteobl	bone
16	chr20:23123000-23130200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr20:23123400-23129000	Weak transcription	Right Ventricle	heart
18	chr20:23123600-23128200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr20:23123600-23128200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr20:23123600-23128600	Weak transcription	Right Atrium	heart
21	chr20:23123600-23132400	Weak transcription	Ovary	ovary
22	chr20:23123800-23128800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr20:23124000-23128000	Weak transcription	A549	lung
24	chr20:23124200-23128200	Enhancers	K562	blood
25	chr20:23124200-23134600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr20:23124400-23127800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr20:23124400-23132800	Weak transcription	Primary T cells from cord blood	blood
28	chr20:23124400-23133000	Weak transcription	Primary B cells from cord blood	blood
29	chr20:23124600-23127800	Weak transcription	Hela-S3	cervix
30	chr20:23124600-23128000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr20:23124600-23128400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr20:23124600-23132400	Weak transcription	Fetal Heart	heart
33	chr20:23124600-23132600	Weak transcription	Colon Smooth Muscle	Colon
34	chr20:23124800-23127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr20:23124800-23128200	Weak transcription	Fetal Thymus	thymus
36	chr20:23125000-23137600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr20:23125200-23128200	Weak transcription	NHEK	skin
38	chr20:23125200-23129400	Enhancers	Fetal Muscle Leg	muscle
39	chr20:23125400-23134400	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr20:23125600-23128200	Enhancers	GM12878-XiMat	blood
41	chr20:23126200-23127800	Weak transcription	Dnd41	blood
42	chr20:23126200-23128800	Weak transcription	Brain Anterior Caudate	brain
43	chr20:23126400-23127800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:23126400-23127800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr20:23126400-23128200	Weak transcription	Aorta	Aorta
46	chr20:23126400-23128200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr20:23126400-23128200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr20:23126400-23128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr20:23126400-23131000	Weak transcription	Fetal Stomach	stomach
50	chr20:23126400-23132600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links