Variant report

Variant	rs189885057
Chromosome Location	chr20:23128153-23128154
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23068190..23071729-chr20:23127032..23130141,4	K562	blood:
2	chr20:23126510..23128987-chr20:23134466..23137305,2	MCF-7	breast:
3	chr20:23127644..23129779-chr20:23341695..23344048,2	K562	blood:
4	chr20:22391083..22392851-chr20:23127548..23129144,2	K562	blood:
5	chr20:23127608..23130209-chr20:23149080..23150975,2	K562	blood:
6	chr20:22391351..22394320-chr20:23127644..23129795,2	K562	blood:
7	chr20:23128094..23130694-chr20:23194983..23196835,2	K562	blood:
8	chr20:23106418..23109174-chr20:23126935..23129451,2	K562	blood:
9	chr20:23064363..23066368-chr20:23127818..23130287,3	K562	blood:
10	chr20:23027375..23033068-chr20:23127953..23133190,8	K562	blood:
11	chr20:23102523..23105175-chr20:23127807..23130561,3	K562	blood:
12	chr20:23127669..23129280-chr20:23170551..23172653,2	K562	blood:
13	chr20:23092456..23098917-chr20:23127069..23136117,14	K562	blood:
14	chr20:23125309..23128497-chr20:23131083..23133976,3	MCF-7	breast:
15	chr20:23073935..23077646-chr20:23127330..23130238,3	K562	blood:
16	chr20:23092388..23096498-chr20:23127168..23130418,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1066935	chr20:23123507-23146449	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23118400-23131000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23119800-23128600	Weak transcription	Gastric	stomach
3	chr20:23120200-23137600	Enhancers	HUVEC	blood vessel
4	chr20:23121000-23144200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:23121200-23128800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr20:23121200-23128800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr20:23121200-23130800	Enhancers	HSMM	muscle
8	chr20:23121600-23130800	Enhancers	NH-A	brain
9	chr20:23121600-23138200	Enhancers	Adipose Nuclei	Adipose
10	chr20:23121800-23137600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:23121800-23143000	Enhancers	NHDF-Ad	bronchial
12	chr20:23122600-23138000	Enhancers	NHLF	lung
13	chr20:23122800-23128800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:23122800-23130800	Enhancers	Osteobl	bone
15	chr20:23123000-23130200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr20:23123400-23129000	Weak transcription	Right Ventricle	heart
17	chr20:23123600-23128200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr20:23123600-23128200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr20:23123600-23128600	Weak transcription	Right Atrium	heart
20	chr20:23123600-23132400	Weak transcription	Ovary	ovary
21	chr20:23123800-23128800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr20:23124200-23128200	Enhancers	K562	blood
23	chr20:23124200-23134600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr20:23124400-23132800	Weak transcription	Primary T cells from cord blood	blood
25	chr20:23124400-23133000	Weak transcription	Primary B cells from cord blood	blood
26	chr20:23124600-23128400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr20:23124600-23132400	Weak transcription	Fetal Heart	heart
28	chr20:23124600-23132600	Weak transcription	Colon Smooth Muscle	Colon
29	chr20:23124800-23128200	Weak transcription	Fetal Thymus	thymus
30	chr20:23125000-23137600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr20:23125200-23128200	Weak transcription	NHEK	skin
32	chr20:23125200-23129400	Enhancers	Fetal Muscle Leg	muscle
33	chr20:23125400-23134400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr20:23125600-23128200	Enhancers	GM12878-XiMat	blood
35	chr20:23126200-23128800	Weak transcription	Brain Anterior Caudate	brain
36	chr20:23126400-23128200	Weak transcription	Aorta	Aorta
37	chr20:23126400-23128200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr20:23126400-23128200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr20:23126400-23128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr20:23126400-23131000	Weak transcription	Fetal Stomach	stomach
41	chr20:23126400-23132600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr20:23126400-23132600	Weak transcription	Brain Substantia Nigra	brain
43	chr20:23126800-23129600	Enhancers	Stomach Mucosa	stomach
44	chr20:23127200-23128600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr20:23127200-23128600	Weak transcription	Spleen	Spleen
46	chr20:23127200-23128800	Weak transcription	Lung	lung
47	chr20:23127200-23142200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr20:23127400-23128200	Enhancers	HepG2	liver
49	chr20:23127400-23129400	Enhancers	Primary hematopoietic stem cells	blood
50	chr20:23127400-23129400	Enhancers	Duodenum Smooth Muscle	Duodenum

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