Variant report

Variant	nsv912834
Chromosome Location	chr20:25615272-25756336
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1655)
CpG islands
(count:1037)
Chromatin interactive
region (count:50)
LncRNA
region (count:40)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1655 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:25643180-25643186	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25651677-25651938	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:25680595-25680824	K562	blood:	n/a	n/a
4	ARID3A	chr20:25649077-25649277	K562	blood:	n/a	n/a
5	ARID3A	chr20:25650554-25651109	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:25677320-25677880	HepG2	liver:	n/a	n/a
7	ATF1	chr20:25677274-25677840	K562	blood:	n/a	n/a
8	ATF2	chr20:25614892-25615389	GM12878	blood:	n/a	n/a
9	ATF2	chr20:25677236-25677565	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr20:25614922-25615298	GM12878	blood:	n/a	n/a
11	ATF2	chr20:25677233-25677726	GM12878	blood:	n/a	n/a
12	ATF2	chr20:25677080-25677802	GM12878	blood:	n/a	n/a
13	ATF3	chr20:25677385-25677707	K562	blood:	n/a	n/a
14	ATF3	chr20:25677314-25677673	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr20:25677322-25677783	GM12878	blood:	n/a	n/a
16	ATF3	chr20:25677026-25677723	HepG2	liver:	n/a	n/a
17	ATF3	chr20:25677287-25677808	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF3	chr20:25677151-25677708	A549	lung:	n/a	n/a
19	ATF3	chr20:25677228-25677741	K562	blood:	n/a	n/a
20	BACH1	chr20:25676650-25677804	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr20:25661461-25661502	K562	blood:	n/a	n/a
22	BATF	chr20:25657118-25657329	GM12878	blood:	n/a	chr20:25657260-25657271
23	BATF	chr20:25614868-25615500	GM12878	blood:	n/a	n/a
24	BATF	chr20:25666354-25666589	GM12878	blood:	n/a	chr20:25666500-25666508
25	BATF	chr20:25734352-25734580	GM12878	blood:	n/a	n/a
26	BATF	chr20:25677396-25677756	GM12878	blood:	n/a	n/a
27	BATF	chr20:25614906-25615298	GM12878	blood:	n/a	n/a
28	BCL11A	chr20:25615002-25615290	GM12878	blood:	n/a	chr20:25615065-25615074
29	BCL11A	chr20:25737731-25737913	GM12878	blood:	n/a	n/a
30	BCL3	chr20:25656638-25657044	GM12878	blood:	n/a	n/a
31	BCLAF1	chr20:25677144-25677775	GM12878	blood:	n/a	n/a
32	BCLAF1	chr20:25677029-25677877	GM12878	blood:	n/a	n/a
33	BHLHE40	chr20:25731988-25732189	K562	blood:	n/a	n/a
34	BHLHE40	chr20:25677136-25677805	GM12878	blood:	n/a	n/a
35	BHLHE40	chr20:25677331-25677787	K562	blood:	n/a	n/a
36	BHLHE40	chr20:25666346-25666586	GM12878	blood:	n/a	n/a
37	BHLHE40	chr20:25666868-25666932	K562	blood:	n/a	n/a
38	BHLHE40	chr20:25676071-25676250	GM12878	blood:	n/a	n/a
39	BRCA1	chr20:25677262-25677749	HepG2	liver:	n/a	n/a
40	BRCA1	chr20:25677310-25677671	H1-hESC	embryonic stem cell:	n/a	n/a
41	BRCA1	chr20:25677353-25677866	Hela-S3	cervix:	n/a	n/a
42	BRCA1	chr20:25677034-25677218	GM12878	blood:	n/a	n/a
43	BRCA1	chr20:25731987-25732070	HepG2	liver:	n/a	n/a
44	CBX3	chr20:25677357-25677727	K562	blood:	n/a	n/a
45	CCNT2	chr20:25676931-25677816	K562	blood:	n/a	chr20:25676965-25676974
46	CEBPB	chr20:25650476-25650967	IMR90	lung:	n/a	chr20:25650761-25650772
47	CEBPB	chr20:25658707-25658977	K562	blood:	n/a	chr20:25658827-25658838
48	CEBPB	chr20:25650582-25650931	A549	lung:	n/a	chr20:25650761-25650772
49	CEBPB	chr20:25657062-25657425	IMR90	lung:	n/a	n/a
50	CEBPB	chr20:25658700-25658982	HepG2	liver:	n/a	chr20:25658827-25658838

(count:1037 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:25677664-25677714	SAEC	small airway:	n/a
2	chr20:25677738-25677788	A549	lung:	n/a
3	chr20:25677563-25677613	ECC-1	luminal epithelium:	n/a
4	chr20:25755634-25755684	AG09319	gingival:	n/a
5	chr20:25657028-25657078	PrEC	prostate:	n/a
6	chr20:25674725-25674775	ovcar-3	ovarian:	n/a
7	chr20:25674198-25674248	HRPEpiC	eye:	n/a
8	chr20:25677563-25677613	GM12878	blood:	n/a
9	chr20:25677290-25677340	SK-N-SH_RA	brain:	n/a
10	chr20:25655097-25655147	ECC-1	luminal epithelium:	n/a
11	chr20:25674198-25674248	PANC-1	pancreas:	n/a
12	chr20:25681052-25681102	HEK293	kidney:	embryo
13	chr20:25677664-25677714	HMEC	breast:	n/a
14	chr20:25677664-25677714	AG09309	skin:	n/a
15	chr20:25677688-25677738	MCF10A-Er-Src	breast:	n/a
16	chr20:25677582-25677632	HEK293	kidney:	embryo
17	chr20:25677673-25677723	ECC-1	luminal epithelium:	n/a
18	chr20:25677496-25677546	HCM	heart:	n/a
19	chr20:25677290-25677340	BJ	skin:	n/a
20	chr20:25677489-25677539	HUVEC	blood vessel:	n/a
21	chr20:25676884-25676934	SK-N-MC	brain:	n/a
22	chr20:25676884-25676934	CMK	blood:	n/a
23	chr20:25674725-25674775	HCF	heart:	n/a
24	chr20:25755634-25755684	NB4	blood:	n/a
25	chr20:25677496-25677546	SK-N-MC	brain:	n/a
26	chr20:25677496-25677546	GM12878	blood:	n/a
27	chr20:25677688-25677738	NHDF-neo	bronchial:	n/a
28	chr20:25677496-25677546	ECC-1	luminal epithelium:	n/a
29	chr20:25677738-25677788	NB4	blood:	n/a
30	chr20:25674725-25674775	PFSK-1	brain:	n/a
31	chr20:25677738-25677788	GM12891	blood:	n/a
32	chr20:25677496-25677546	HCF	heart:	n/a
33	chr20:25677496-25677546	SK-N-SH	brain:	n/a
34	chr20:25674725-25674775	CMK	blood:	n/a
35	chr20:25677496-25677546	SK-N-SH_RA	brain:	n/a
36	chr20:25655097-25655147	GM19239	blood:	n/a
37	chr20:25677582-25677632	GM12892	blood:	n/a
38	chr20:25676884-25676934	GM19239	blood:	n/a
39	chr20:25755634-25755684	BJ	skin:	n/a
40	chr20:25677673-25677723	GM12892	blood:	n/a
41	chr20:25674198-25674248	RPTEC	kidney:	n/a
42	chr20:25677673-25677723	CMK	blood:	n/a
43	chr20:25674725-25674775	Hepatocyte	liver:	n/a
44	chr20:25677563-25677613	HNPCEpiC	eye:	n/a
45	chr20:25677489-25677539	RPTEC	kidney:	n/a
46	chr20:25657028-25657078	HepG2	liver:	n/a
47	chr20:25677738-25677788	GM12892	blood:	n/a
48	chr20:25677688-25677738	HEEpiC	esophagus:	n/a
49	chr20:25677623-25677673	AG04450	lung:	fetal
50	chr20:25677290-25677340	GM12878	blood:	n/a

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:25604068..25607059-chr20:25675582..25678596,4	MCF-7	breast:
2	chr20:25650621..25655076-chr20:25655706..25658841,4	MCF-7	breast:
3	chr20:25604135..25606438-chr20:25629912..25632565,2	K562	blood:
4	chr20:25665917..25666615-chrX:68763514..68764371,2	MCF-7	breast:
5	chr20:25673244..25674804-chr20:25675051..25677255,2	K562	blood:
6	chr20:25650737..25652404-chr20:25662026..25664673,2	K562	blood:
7	chr20:25603901..25606478-chr20:25617196..25618915,2	K562	blood:
8	chr20:25604862..25606415-chr20:25633775..25635785,2	MCF-7	breast:
9	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
10	chr20:25722229..25725727-chr20:25729009..25731451,3	MCF-7	breast:
11	chr20:25719439..25721386-chr20:25725863..25727758,2	K562	blood:
12	chr20:25675586..25677215-chr20:25728197..25729782,2	MCF-7	breast:
13	chr11:122931373..122931944-chr20:25676667..25677267,2	NB4	blood:
14	chr20:25601566..25607773-chr20:25608657..25615631,12	MCF-7	breast:
15	chr20:25727469..25729069-chr20:25729208..25731767,2	MCF-7	breast:
16	chr20:25727469..25729069-chr20:25729208..25731767,2	MCF-7	breast:
17	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:
18	chr20:25565180..25567156-chr20:25676091..25678288,2	MCF-7	breast:
19	chr20:25638905..25641793-chr20:25662491..25665078,2	MCF-7	breast:
20	chr15:51057473..51058014-chr20:25677690..25678458,2	Hela-S3	cervix:
21	chr20:25722229..25725727-chr20:25729009..25731451,3	MCF-7	breast:
22	chr15:91260044..91260612-chr20:25677141..25678100,2	Hela-S3	cervix:
23	chr20:25652247..25655467-chr20:25656048..25658706,3	MCF-7	breast:
24	chr20:25722430..25724237-chr20:25730774..25732433,2	MCF-7	breast:
25	chr20:25477099..25478848-chr20:25676437..25678716,2	MCF-7	breast:
26	chr20:25666393..25667340-chr20:25675280..25676053,2	MCF-7	breast:
27	chr20:25603480..25606369-chr20:25672275..25675110,4	MCF-7	breast:
28	chr20:25724362..25726772-chr20:25730117..25732071,3	MCF-7	breast:
29	chr20:25604523..25606261-chr20:25653014..25654610,2	MCF-7	breast:
30	chr20:25604700..25606724-chr20:25650561..25652560,2	MCF-7	breast:
31	chr20:25603691..25605577-chr20:25648966..25650747,2	MCF-7	breast:
32	chr20:25639583..25642307-chr20:25730598..25732311,2	MCF-7	breast:
33	chr20:25603354..25604964-chr20:25636197..25637849,2	MCF-7	breast:
34	chr20:25673244..25674804-chr20:25675051..25677255,2	K562	blood:
35	chr20:25638905..25641793-chr20:25662491..25665078,2	MCF-7	breast:
36	chr20:25666393..25667340-chr20:25675280..25676053,2	MCF-7	breast:
37	chr20:25675586..25677215-chr20:25728197..25729782,2	MCF-7	breast:
38	chr20:25603937..25605836-chr20:25653672..25656998,3	MCF-7	breast:
39	chr20:25660568..25662949-chr20:25667578..25669475,2	K562	blood:
40	chr20:25600186..25602074-chr20:25626007..25628031,2	K562	blood:
41	chr20:25719439..25721386-chr20:25725863..25727758,2	K562	blood:
42	chr20:25670546..25672193-chr20:25675411..25678259,2	MCF-7	breast:
43	chr20:25603699..25606216-chr20:25676779..25679090,3	MCF-7	breast:
44	chr20:25671071..25673125-chr20:25675873..25678423,2	K562	blood:
45	chr20:25602965..25606226-chr20:25676160..25678613,3	K562	blood:
46	chr20:25649313..25652237-chr20:25660876..25663526,2	K562	blood:
47	chr20:25658816..25662008-chr20:25664532..25667896,3	MCF-7	breast:
48	chr20:25652247..25655467-chr20:25656048..25658706,3	MCF-7	breast:
49	chr20:25603881..25606612-chr20:25668010..25670254,2	K562	blood:
50	chr20:25671071..25673125-chr20:25675586..25678423,3	K562	blood:

(count:40 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2
2	lnc-FAM182B-8	chr20:25755746-25755948	NONHSAT079187
3	lnc-FAM182B-8	chr20:25750234-25754795	NONHSAT079187
4	lnc-GINS1-1	chr20:25650747-25650980	ENSG00000213742.2
5	lnc-NANP-1	chr20:25677395-25677451	NONHSAT079178
6	lnc-NANP-1	chr20:25657585-25657673	NONHSAT079178
7	lnc-GINS1-1	chr20:25654488-25654643	ENSG00000213742.2
8	lnc-GINS1-1	chr20:25654488-25654544	ENSG00000213742.2
9	lnc-GINS1-1	chr20:25657572-25658184	ENSG00000213742.2
10	lnc-GINS1-1	chr20:25655533-25655714	ENSG00000213742.2
11	lnc-GINS1-2	chr20:25733199-25733422	NONHSAT079183
12	lnc-GINS1-7	chr20:25714900-25715729	NONHSAT079180
13	lnc-GINS1-2	chr20:25733199-25733397	ENSG00000226465.1
14	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2
15	lnc-FAM182B-1	chr20:25730059-25730236	XLOC_013708
16	lnc-GINS1-6	chr20:25681199-25681397	NONHSAT079179
17	lnc-NANP-1	chr20:25666632-25666885	NONHSAT079178
18	lnc-GINS1-1	chr20:25626167-25626284	ENSG00000213742.2
19	lnc-GINS1-1	chr20:25654488-25658710	ENSG00000213742.2
20	lnc-GINS1-6	chr20:25679854-25679974	NONHSAT079179
21	lnc-GINS1-2	chr20:25731520-25731591	NONHSAT079183
22	lnc-GINS1-2	chr20:25733199-25733422	NONHSAT079184
23	lnc-GINS1-2	chr20:25731854-25731974	ENSG00000226465.1
24	lnc-FAM182B-1	chr20:25730940-25732440	XLOC_013708
25	lnc-FAM182B-8	chr20:25755746-25755908	NONHSAT147160
26	lnc-GINS1-1	chr20:25657572-25657688	ENSG00000213742.2
27	lnc-GINS1-1	chr20:25654488-25654643	ENSG00000213742.2
28	lnc-NANP-1	chr20:25667027-25667102	NONHSAT079178
29	lnc-ZNF337-1	chr20:25650493-25651022	NONHSAT079175
30	lnc-GINS1-1	chr20:25655533-25655538	ENSG00000213742.2
31	lnc-GINS1-5	chr20:25651389-25652886	NONHSAT079176
32	lnc-ZNF337-2	chr20:25635232-25635517	NONHSAT079174
33	lnc-GINS1-1	chr20:25626167-25626284	ENSG00000213742.2
34	lnc-FAM182B-8	chr20:25754652-25754795	NONHSAT147160
35	lnc-NANP-1	chr20:25666203-25666298	NONHSAT079178
36	lnc-GINS1-1	chr20:25626167-25626284	ENSG00000213742.2
37	lnc-GINS1-2	chr20:25731813-25731974	NONHSAT079184
38	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2
39	lnc-GINS1-1	chr20:25626167-25626284	ENSG00000213742.2
40	lnc-GINS1-1	chr20:25654488-25654643	ENSG00000213742.2

No data

Variant related genes	Relation type
VN1R108P	TF binding region
FAM182B	TF binding region
MED28P7	TF binding region
RN7SL594P	TF binding region
ENSG00000226465	TF binding region
ZNF337	TF binding region
VN1R108P	CpG island
FAM182B	CpG island
MED28P7	CpG island
RN7SL594P	CpG island
ENSG00000226465	CpG island
ZNF337	CpG island
ENSG00000213742	chromatin interactions
ENSG00000259736	chromatin interactions
ENSG00000170191	chromatin interactions
ENSG00000226465	chromatin interactions
ENSG00000236542	chromatin interactions
ENSG00000138600	chromatin interactions
ENSG00000197299	chromatin interactions
ENSG00000130684	chromatin interactions
ENSG00000101004	chromatin interactions
PTPMT1	miRNA target sites
PTPLAD1	miRNA target sites

Extended variants
information (count: 5908 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:5908 , 50 per page) page: 1 2 3 4 5 6 7 ... 119

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113696977	chr20:25615272-25615273	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs199509155	chr20:25615286-25615287	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs532100405	chr20:25615287-25615288	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs1883527	chr20:25615292-25615293	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs114589818	chr20:25615322-25615323	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs138163039	chr20:25615341-25615342	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs565486314	chr20:25615350-25615351	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs13038043	chr20:25615411-25615412	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs531106348	chr20:25615433-25615434	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs375674480	chr20:25615465-25615466	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs551295045	chr20:25615508-25615509	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs551078062	chr20:25615520-25615521	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs187852668	chr20:25615526-25615527	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs547038537	chr20:25615550-25615551	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs539673193	chr20:25615579-25615580	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs147143045	chr20:25615615-25615616	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs570253630	chr20:25615631-25615632	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs73341321	chr20:25615695-25615696	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs575442881	chr20:25615698-25615699	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111694147	chr20:25615705-25615706	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs375896766	chr20:25615725-25615726	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369874170	chr20:25615729-25615730	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572960665	chr20:25615741-25615742	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571037287	chr20:25615745-25615746	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375936910	chr20:25615765-25615766	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs140263008	chr20:25615768-25615769	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs539816710	chr20:25615813-25615814	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144329963	chr20:25615835-25615836	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150739364	chr20:25615848-25615849	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75322724	chr20:25615918-25615919	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192121237	chr20:25615991-25615992	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs6050734	chr20:25616013-25616014	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs565325070	chr20:25616016-25616017	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs531166096	chr20:25616024-25616025	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544553743	chr20:25616025-25616026	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs561598566	chr20:25616050-25616051	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs545894133	chr20:25616128-25616129	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs530433051	chr20:25616136-25616137	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs6076375	chr20:25616167-25616168	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139168716	chr20:25616187-25616188	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs6076376	chr20:25616190-25616191	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566873400	chr20:25616213-25616214	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs142905696	chr20:25616229-25616230	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371010666	chr20:25616244-25616245	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34937248	chr20:25616247-25616248	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552681213	chr20:25616281-25616282	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568944553	chr20:25616285-25616286	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368716232	chr20:25616296-25616297	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149930077	chr20:25616317-25616318	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs6138622	chr20:25616336-25616337	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:56)

Disease	PMID	Source
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2245 , 50 per page) page: 1 2 3 4 5 6 7 ... 45

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25605400-25616800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:25605400-25628600	Weak transcription	Left Ventricle	heart
3	chr20:25605400-25630400	Weak transcription	Aorta	Aorta
4	chr20:25605600-25616000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:25605600-25616400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr20:25605600-25616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:25605600-25616400	Weak transcription	Thymus	Thymus
8	chr20:25605600-25616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:25605600-25616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:25605600-25616800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:25605600-25616800	Weak transcription	Primary T cells from cord blood	blood
12	chr20:25605600-25616800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr20:25605600-25618000	Weak transcription	NH-A	brain
14	chr20:25605600-25619200	Weak transcription	Liver	Liver
15	chr20:25605600-25627000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr20:25605600-25628400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr20:25605600-25628600	Weak transcription	Colon Smooth Muscle	Colon
18	chr20:25605600-25630200	Weak transcription	Fetal Intestine Large	intestine
19	chr20:25605600-25635000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr20:25605600-25654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr20:25605800-25616800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr20:25606200-25616600	Weak transcription	Fetal Muscle Leg	muscle
23	chr20:25606200-25617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr20:25606200-25626400	Weak transcription	A549	lung
25	chr20:25607400-25615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr20:25607400-25616600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr20:25607400-25617000	Weak transcription	K562	blood
28	chr20:25607600-25617000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr20:25607800-25623000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr20:25609200-25653400	Weak transcription	Brain Substantia Nigra	brain
31	chr20:25610200-25630400	Weak transcription	Ovary	ovary
32	chr20:25610200-25635600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr20:25610600-25625000	Weak transcription	HSMMtube	muscle
34	chr20:25610600-25626200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr20:25610600-25630600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr20:25611400-25653200	Weak transcription	Fetal Intestine Small	intestine
37	chr20:25611800-25615400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr20:25612200-25616600	Weak transcription	Fetal Thymus	thymus
39	chr20:25612600-25617400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr20:25613000-25616400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr20:25613400-25635000	Weak transcription	Hela-S3	cervix
42	chr20:25613600-25624000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr20:25613600-25635400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr20:25613800-25615600	Enhancers	GM12878-XiMat	blood
45	chr20:25613800-25617600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr20:25614000-25616800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr20:25614200-25626000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr20:25614400-25616600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr20:25614400-25632400	Weak transcription	Osteobl	bone
50	chr20:25614600-25615800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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