Variant report

Variant	rs138163039
Chromosome Location	chr20:25615341-25615342
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25601566..25607773-chr20:25608657..25615631,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170191	Chromatin interaction
ENSG00000213742	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060591	chr20:25388781-25628750	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv544223	chr20:25388781-25628750	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1067441	chr20:25397566-25615439	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2762069	chr20:25506582-25619528	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25605400-25616800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:25605400-25628600	Weak transcription	Left Ventricle	heart
3	chr20:25605400-25630400	Weak transcription	Aorta	Aorta
4	chr20:25605600-25616000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:25605600-25616400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr20:25605600-25616400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:25605600-25616400	Weak transcription	Thymus	Thymus
8	chr20:25605600-25616600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:25605600-25616600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:25605600-25616800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:25605600-25616800	Weak transcription	Primary T cells from cord blood	blood
12	chr20:25605600-25616800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr20:25605600-25618000	Weak transcription	NH-A	brain
14	chr20:25605600-25619200	Weak transcription	Liver	Liver
15	chr20:25605600-25627000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr20:25605600-25628400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr20:25605600-25628600	Weak transcription	Colon Smooth Muscle	Colon
18	chr20:25605600-25630200	Weak transcription	Fetal Intestine Large	intestine
19	chr20:25605600-25635000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr20:25605600-25654600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr20:25605800-25616800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr20:25606200-25616600	Weak transcription	Fetal Muscle Leg	muscle
23	chr20:25606200-25617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr20:25606200-25626400	Weak transcription	A549	lung
25	chr20:25607400-25615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr20:25607400-25616600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr20:25607400-25617000	Weak transcription	K562	blood
28	chr20:25607600-25617000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr20:25607800-25623000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr20:25609200-25653400	Weak transcription	Brain Substantia Nigra	brain
31	chr20:25610200-25630400	Weak transcription	Ovary	ovary
32	chr20:25610200-25635600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr20:25610600-25625000	Weak transcription	HSMMtube	muscle
34	chr20:25610600-25626200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr20:25610600-25630600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr20:25611400-25653200	Weak transcription	Fetal Intestine Small	intestine
37	chr20:25611800-25615400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr20:25612200-25616600	Weak transcription	Fetal Thymus	thymus
39	chr20:25612600-25617400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr20:25613000-25616400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr20:25613400-25635000	Weak transcription	Hela-S3	cervix
42	chr20:25613600-25624000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr20:25613600-25635400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr20:25613800-25615600	Enhancers	GM12878-XiMat	blood
45	chr20:25613800-25617600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr20:25614000-25616800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr20:25614200-25626000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr20:25614400-25616600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr20:25614400-25632400	Weak transcription	Osteobl	bone
50	chr20:25614600-25615800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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