Variant report

Variant	nsv946440
Chromosome Location	chr1:158424123-158429628
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR10K1-1	chr1:158423988-158425063	NONHSAT006985

Extended variants
information (count: 226 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:226 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183708362	chr1:158424152-158424153	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs115176534	chr1:158424177-158424178	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs527418965	chr1:158424179-158424180	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs536716633	chr1:158424205-158424206	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs150563513	chr1:158424224-158424225	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs563766711	chr1:158424238-158424239	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs539349077	chr1:158424239-158424240	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs73023896	chr1:158424261-158424262	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs549332770	chr1:158424309-158424310	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs568025338	chr1:158424334-158424335	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs35873993	chr1:158424347-158424348	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201719106	chr1:158424396-158424397	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs529106233	chr1:158424404-158424405	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs547617540	chr1:158424422-158424423	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs565730539	chr1:158424423-158424424	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs139554855	chr1:158424442-158424443	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs558762266	chr1:158424460-158424461	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs570932383	chr1:158424468-158424469	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs538250598	chr1:158424478-158424479	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs556548886	chr1:158424490-158424491	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs575255977	chr1:158424497-158424498	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs535761873	chr1:158424500-158424501	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs554378773	chr1:158424558-158424559	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs572525723	chr1:158424584-158424585	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs546349004	chr1:158424594-158424595	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs563852404	chr1:158424597-158424598	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs575693411	chr1:158424615-158424616	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs1844787	chr1:158424637-158424638	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs149749632	chr1:158424715-158424716	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs536407724	chr1:158424774-158424775	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs367729592	chr1:158424794-158424795	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs529228276	chr1:158424798-158424799	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs547361931	chr1:158424810-158424811	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs559530510	chr1:158424819-158424820	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs533004701	chr1:158424825-158424826	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs551570578	chr1:158424826-158424827	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs570959178	chr1:158424827-158424828	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs113231575	chr1:158424840-158424841	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs186845053	chr1:158424841-158424842	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs201828566	chr1:158424892-158424893	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs3183597	chr1:158424898-158424899	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs191721158	chr1:158424912-158424913	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs1043921	chr1:158424919-158424920	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs184300622	chr1:158424936-158424937	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs572664383	chr1:158424963-158424964	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs190179275	chr1:158424983-158424984	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs111328707	chr1:158425073-158425074	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs112207689	chr1:158425115-158425116	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575780262	chr1:158425130-158425131	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369964952	chr1:158425145-158425146	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Non-small cell lung cancer	21385341	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	19287148	CNVD
Glomerulonephritis	19341492	CNVD
Systemic lupus erythematosus	18559452	CNVD
Systemic autoimmune disease	17597778	CNVD
Glomerulonephritis	17008540	CNVD
Glomerulonephritis	16482158	CNVD
Soft tissue tumor	16732325	CNVD
Cancer	17060936	CNVD
Lung cancer	16740712	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Breast cancer	21045282	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Follicular lymphoma	18703704	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158417600-158424200	Weak transcription	Thymus	Thymus
2	chr1:158421600-158425000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:158424200-158425200	Strong transcription	Thymus	Thymus
4	chr1:158424200-158430800	Weak transcription	Fetal Thymus	thymus
5	chr1:158425000-158425200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:158425200-158430800	Weak transcription	Thymus	Thymus

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