Variant report

Variant	rs73023896
Chromosome Location	chr1:158424261-158424262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR10K1-1	chr1:158423988-158425063	NONHSAT006985

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12240099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1546063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59118976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59544945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61369167	1.00[AFR][1000 genomes]
rs6662167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019708	1.00[AFR][1000 genomes]
rs73019718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019731	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021797	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv946440	chr1:158424123-158429628	Strong transcription Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158421600-158425000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:158424200-158425200	Strong transcription	Thymus	Thymus
3	chr1:158424200-158430800	Weak transcription	Fetal Thymus	thymus

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