Variant report

Variant	rs73019729
Chromosome Location	chr1:158390119-158390120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12240099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1546063	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59118976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59544945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61369167	0.94[AFR][1000 genomes]
rs6662167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691241	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017737	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017799	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019708	0.94[AFR][1000 genomes]
rs73019718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019727	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019739	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73019740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021797	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023812	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023813	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023890	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023896	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025814	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025824	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025833	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523172	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537465	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540724	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158383000-158391600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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