Variant report

Variant	nsv94939
Chromosome Location	chr15:73295725-73301168
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73292315..73294448-chr15:73297125..73298868,2	MCF-7	breast:

Extended variants
information (count: 207 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:207 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186776797	chr15:73295773-73295774	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141759285	chr15:73295779-73295780	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560764933	chr15:73295800-73295801	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs28496484	chr15:73295801-73295802	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs543902036	chr15:73295806-73295807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs565091902	chr15:73295818-73295819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532579780	chr15:73295851-73295852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs28661567	chr15:73295875-73295876	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs560115828	chr15:73295876-73295877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191843193	chr15:73295877-73295878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548763856	chr15:73295904-73295905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184074330	chr15:73295958-73295959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376429958	chr15:73295999-73296000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs149477776	chr15:73296033-73296034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs549891489	chr15:73296085-73296086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs571154565	chr15:73296089-73296090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs73435936	chr15:73296090-73296091	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs186206948	chr15:73296106-73296107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571976132	chr15:73296121-73296122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116016191	chr15:73296124-73296125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554420827	chr15:73296134-73296135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559180070	chr15:73296148-73296149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs143892926	chr15:73296150-73296151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148615210	chr15:73296207-73296208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376238322	chr15:73296282-73296283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs559953255	chr15:73296326-73296327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs189827740	chr15:73296378-73296379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541469391	chr15:73296391-73296392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559799367	chr15:73296424-73296425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs530387600	chr15:73296460-73296461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs528679800	chr15:73296473-73296474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs548900629	chr15:73296502-73296503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs12438917	chr15:73296510-73296511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548758305	chr15:73296517-73296518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs80128845	chr15:73296526-73296527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs144169981	chr15:73296538-73296539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571355338	chr15:73296561-73296562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs538363394	chr15:73296629-73296630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546962098	chr15:73296637-73296638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567854273	chr15:73296648-73296649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs75662475	chr15:73296653-73296654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs147957688	chr15:73296695-73296696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554887909	chr15:73296710-73296711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs576154791	chr15:73296715-73296716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs537278479	chr15:73296810-73296811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182273551	chr15:73296817-73296818	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577375683	chr15:73296850-73296851	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140146933	chr15:73296931-73296932	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186546075	chr15:73296942-73296943	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs574893670	chr15:73296947-73296948	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Prostate cancer	16573809	CNVD
Autism	17322880	CNVD
phobic disorder	16773131	CNVD
Autism	21480499	CNVD
Disorders of sex development	22290220	CNVD
Mental retardation	19951919	CNVD
Mental retardation	16773131	CNVD
T-cell lymphomas	19863542	CNVD
15q24 microdeletion syndrome	22180641	CNVD
15q24 microdeletion syndrome	19921647	CNVD
Disease	22216833	CNVD
Mental retardation	17360722	CNVD
15q24 microdeletion syndrome	22216833	CNVD
15q24 microdeletion syndrome	22283845	CNVD
Developmental delay	17932688	CNVD
craniofacial dysmorphism	17932688	CNVD
digital and genital abnormalities	17932688	CNVD
Mental retardation	17621639	CNVD
Autism	20808228	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Epilepsy	22083797	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73292200-73296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:73292800-73297600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:73292800-73301400	Weak transcription	Fetal Stomach	stomach
4	chr15:73294800-73295800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73295000-73295800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73296800-73297000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:73296800-73298000	Enhancers	Fetal Intestine Small	intestine
8	chr15:73296800-73298600	Enhancers	Fetal Intestine Large	intestine
9	chr15:73297000-73297400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:73297400-73298200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr15:73297600-73298400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr15:73297800-73298000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:73298000-73299800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:73298200-73298400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr15:73298400-73303200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:73299800-73302400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:73301000-73301200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links