Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12324130	0.94[ASN][1000 genomes]
rs12904681	0.94[ASN][1000 genomes]
rs28437572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625503	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28661567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668448	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687996	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28764203	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28888396	0.94[ASN][1000 genomes]
rs7171947	0.94[ASN][1000 genomes]
rs7172316	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172629	0.94[ASN][1000 genomes]
rs7174900	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038862	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920504	0.94[ASN][1000 genomes]
rs9920548	0.94[ASN][1000 genomes]
rs9920701	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920770	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920771	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921028	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv94939	chr15:73295725-73301168	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73292200-73296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:73292800-73297600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:73292800-73301400	Weak transcription	Fetal Stomach	stomach

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