Variant report

Variant	rs12904681
Chromosome Location	chr15:73283636-73283637
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11072397	0.86[EUR][1000 genomes]
rs11858307	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12324130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913589	0.82[AMR][1000 genomes]
rs16957506	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28437572	0.94[ASN][1000 genomes]
rs28451375	0.89[EUR][1000 genomes]
rs28496484	0.94[ASN][1000 genomes]
rs28625503	0.94[ASN][1000 genomes]
rs28661567	0.94[ASN][1000 genomes]
rs28668448	0.94[ASN][1000 genomes]
rs28687436	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28687996	0.94[ASN][1000 genomes]
rs28764203	0.94[ASN][1000 genomes]
rs28888396	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35755007	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35973515	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495032	0.86[EUR][1000 genomes]
rs67210936	0.87[EUR][1000 genomes]
rs71397271	0.89[EUR][1000 genomes]
rs7171947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172316	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7172629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174900	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72739407	0.89[EUR][1000 genomes]
rs8026733	0.84[EUR][1000 genomes]
rs8038862	0.94[ASN][1000 genomes]
rs9920504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920548	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920701	0.94[ASN][1000 genomes]
rs9920770	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9920771	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9921028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282800-73284200	Enhancers	NHEK	skin
3	chr15:73282800-73284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73282800-73285600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:73283200-73285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:73283400-73284000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:73283400-73284200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:73283400-73285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:73283600-73286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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