Variant report

Variant	rs72739407
Chromosome Location	chr15:73254027-73254028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73253962..73256097-chr15:73259190..73261337,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11072397	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854504	0.87[ASN][1000 genomes]
rs11858307	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324130	0.89[EUR][1000 genomes]
rs12904681	0.89[EUR][1000 genomes]
rs12909626	0.86[AMR][1000 genomes]
rs1375495	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16957506	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16957509	0.86[AMR][1000 genomes]
rs1900899	0.81[ASN][1000 genomes]
rs28451375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28888396	0.89[EUR][1000 genomes]
rs34770199	0.86[AMR][1000 genomes]
rs35206920	0.86[AMR][1000 genomes]
rs35686353	0.83[AMR][1000 genomes]
rs35755007	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35973515	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35988290	0.83[AMR][1000 genomes]
rs4632105	0.87[ASN][1000 genomes]
rs4776620	0.81[ASN][1000 genomes]
rs4777568	0.81[ASN][1000 genomes]
rs6495030	0.81[ASN][1000 genomes]
rs6495032	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67210936	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71397271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171947	0.89[EUR][1000 genomes]
rs7172629	0.89[EUR][1000 genomes]
rs8026733	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033874	0.81[ASN][1000 genomes]
rs8035197	0.81[ASN][1000 genomes]
rs8035210	0.81[ASN][1000 genomes]
rs9920504	0.89[EUR][1000 genomes]
rs9920548	0.88[EUR][1000 genomes]
rs9921028	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73253400-73254600	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:73253400-73255000	Enhancers	Colonic Mucosa	Colon
3	chr15:73253400-73258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:73253400-73261400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:73253600-73254200	Enhancers	Small Intestine	intestine
6	chr15:73253600-73254400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:73253600-73254800	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr15:73253600-73255000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:73253600-73255200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr15:73253800-73254400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:73253800-73254800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:73253800-73255200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr15:73253800-73255200	Enhancers	Fetal Intestine Small	intestine
14	chr15:73254000-73254600	Enhancers	Fetal Brain Male	brain

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