Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73253962..73256097-chr15:73259190..73261337,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11072397	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11858307	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12324130	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12904681	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1375495	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28451375	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28888396	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35755007	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35973515	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4636887	0.82[AMR][1000 genomes]
rs6495032	0.95[EUR][1000 genomes]
rs67210936	0.96[EUR][1000 genomes]
rs71397271	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7171947	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7172629	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7179577	0.84[AMR][1000 genomes]
rs72739407	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8026733	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9920504	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9920548	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9921028	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16957506	LRRC49	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73253400-73254600	Enhancers	Duodenum Mucosa	Duodenum
2	chr15:73253400-73255000	Enhancers	Colonic Mucosa	Colon
3	chr15:73253400-73258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:73253400-73261400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:73253600-73254400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:73253600-73254800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:73253600-73255000	Enhancers	Fetal Muscle Leg	muscle
8	chr15:73253600-73255200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr15:73253800-73254400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:73253800-73254800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:73253800-73255200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr15:73253800-73255200	Enhancers	Fetal Intestine Small	intestine
13	chr15:73254000-73254600	Enhancers	Fetal Brain Male	brain
14	chr15:73254200-73255200	Enhancers	Fetal Intestine Large	intestine

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