Variant report

Variant	rs1375495
Chromosome Location	chr15:73244184-73244185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11072397	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11858307	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16957506	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28451375	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35755007	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35973515	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495032	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67210936	0.89[EUR][1000 genomes]
rs71397271	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72739407	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8026733	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9920548	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73238400-73253800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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