Variant report

Variant	rs4632105
Chromosome Location	chr15:73289920-73289921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072397	0.87[ASN][1000 genomes]
rs11854504	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858307	0.87[ASN][1000 genomes]
rs1900899	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28451375	0.87[ASN][1000 genomes]
rs35755007	0.87[ASN][1000 genomes]
rs35973515	0.87[ASN][1000 genomes]
rs4776620	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777568	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495030	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495032	0.87[ASN][1000 genomes]
rs71397271	0.87[ASN][1000 genomes]
rs72739407	0.87[ASN][1000 genomes]
rs8033874	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8035197	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8035210	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:73284400-73290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:73284600-73290400	Enhancers	Fetal Stomach	stomach
4	chr15:73285000-73292400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:73287200-73290000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:73287400-73292600	Weak transcription	Aorta	Aorta
7	chr15:73287600-73292600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:73287800-73290200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:73287800-73290200	Weak transcription	NHEK	skin
10	chr15:73287800-73290400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:73288200-73291400	Weak transcription	Fetal Intestine Small	intestine
12	chr15:73288200-73292200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:73288400-73290400	Weak transcription	Fetal Brain Male	brain
14	chr15:73288600-73291400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:73288800-73290600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:73288800-73290800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:73289200-73293600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:73289600-73292600	Enhancers	Stomach Mucosa	stomach
19	chr15:73289800-73290800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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